SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17040

Length: 2472 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17040
CGTCGTGACCTTGGCTGTCACTCAAGTATTGAAGCCAAAGTCGTCTATGGCTCATTGATCATCCGATTTTTCACTCTCGCCATGGGATCGACAGAAATGGCTGTGAAGGCTCTCGTTTTTGCGATTATGATATGCGGGGCAGTTGCTCTATTCGAACCTGTATCAGAAACCCACAGATCTGCAGCTATTGAGTTATTTATTCCCAAAGAGGATGGATCTTATGGAAGCCTGGAGGAAACCTATCAGGCATTGCGGTCTTTTCAGGTTCTTGGCATCGAAGCGAAGAATTCTGACCAGAAGACATGCCAACTGGCATTTGAAGCACTGAAATATTCTTCTGCACAAATCAAAGACATTTATTATGCACTCAAAATCACTGAGATTTTGAAGTGTCCATTTAGTGATGCCGATGTAGTCAAGGGCATTGCATCAAAGCTGTTATCACACATAAAGGGTGCTAACTCTTTGCTTGATTACTATTACCCTCTCAGTTGTTTGGTCTCTATCAAGAATCAGGATTTGGCATCTGAAAGTGGCATTATTCTGGAGGATGCCAGCGGTATTTTTCAATCGATCAAGAGTTTAAGTAAAAATGATGGAACATGGCGATATACATCTAGTGAGGGTGAATCTAGTCCCCATGCTGCTGGGCTTGCCTTAGAAGCACTTGCTGGGGTCGTAGCATTGGCAGAGTCTAACATTGAACAGGCTAAGATTGGATTGGTTAAGAATGACATAATCAAACTGTTTGATAACCTTGAAAGTTATGAGGATGGGTCATTATACTTTGATGAGAAGCCAGTTGATGCTAGTAGGGGAAATGGAGGGTCACTCTCAGCTACCTCTTCCGTTGTGCGTGGAGTTAAAGCCTTTGCAGCAGTTATTCCTGGGAAGCTAAATATTCCAGAAGATAAAGTAGTAGGTATTGCAAACTTCTTCCTCAGTATTGGTGTTCCAGGAAGTTCCATTGAAATCTATCATCAACTTGATTCCTTGGGCAACTTGGAGGATAACAGCATTACTATTCCTCTGGTCCTATCAATCCCTGCTACTGTACTTTCATTGACATCAAGGGAGCATTTGAAGGTTATGATTAGCACTGTGCTGGGATCTGCAGCACCTCCTATGGTGGTCAATCTTGTTCGTGCTGTCAAATTAGATTCCAAAGATGCTCCTATAGTTCATGACCAGGAACTTCCGTTCAATCTGGAGAATTCAGCTTACACAATGGACTTTCTTTCCAAGGGAGTTGATGTGGGAAAATATTATTTGACTTTTGAAGTCTTGCCTCATAATGTTGAACATGGTAAAACCTACTCTGCTGGAGGGCAAGTTCAAGTGCTGATCACTGTCACTGGCATTATCAAAATCAGCGATGCTGAAATAGCTGTGCTAGATACTGATACTGGGAGTGCAGAGACTCTGAAAAAACTTGATCTGTCAAAAGAAGAAACTGTGTTGTTGTCTGCAAATCACTTACAGCGGCTGCATCTCTCGTTCCAGATGACTACACCTCCTGGTGGCTTTTTTAAACCCCATCAGGTGTTCCTCAGGTTAAGACATGAAAGTAAAGTGGAACATATATTTTTACTGAAATCTTCTGGAAAGAAGTTTGAGTCATTGCTGGATTTTCTCGGCCTGGTTGAAAATTTTTACTACCTTTCTGGGGCATATACCATTGAGCTTGCTGTGGGCGATTCAACTATGGAAAATTCATTTTTAAAGTTGTTGGGCTATCTGGAGCTGGACTTACCAGAGGCTCCAGAAAATGCAGCTCGTCCTCGACCAGCAGCTATTGATATTGCTTCAAGATTCGCACCTGCAGCTGAGATAACACATATTTTCCGGACACCTGAAAAGCTTCCTCCATCTGAGCTCTCTTATGCATTTTTGACTCTTACTTTATTGCCTTTCCTTGGATTTCTAATTGGGCTTTGGAGTTTAGGGGTGAATTTAAAATTTTTTCCCACAGCTGGCCTGCCGTTGGTCTCAGCCATATTATTCCACAGTGGTATACTGGCGGTGCTGGTCCTATATATTCTTTTCTGGGTCAAGTTAAATCTCTTCACCACGTTGAAGTATCTTGGTTTCCTTGGACTCTTTCTGGTTGCGGTGGGCCATAGTATACTGTCCCACCTGGCTTATATTTCTTCAAAAGTGAAGTCGAATTGAAGATGTTGAGATTTTTTCTTTGTGCCAGATCTGGCCACAGTTACAATTTTGTTAGATCAAAAGGATAAATCCAGCGTAAATGCAAATTTCAGATTCTCTTGTTTAAATGAGAAAAGCACATTAATGTAAGTGATAAATTGCAAAGAAGGTGAAAACGTTGAGGAGCAATAAGCTTGTGAATTTTATATGTTGCAGTGGTTTATGCATTTCAAATGCAAATATAATTAGTTTAATGAGAAAACACATGGAATTATGAGGCATTCTGGTATGCATTAATGTTTTGGTTAATAGATTGTGGAT

Ace file of the UniGene sp_v1.1_unigene17040

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribophorin II, putative (EC:2.4.1.119)	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	71%
Blast2go	protein amino acid terminal N-glycosylation	GO:0006496	Biological Process	71%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribophorin II	IPR008814	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAK3

Fln msg: your sequence is longer than subject: 697 - 124

Fln protein: MGSTEMAVKALVFAIMICGAVALFEPVSETHRSAAIELFIPKEDGSYGSLEETYQALRSFQVLGIEAKNSDQKTCQLAFEALKYSSAQIKDIYYALKITEILKCPFSDADVVKGIASKLLSHIKGANSLLDYYYPLSCLVSIKNQDLASESGIILEDASGIFQSIKSLSKNDGTWRYTSSEGESSPHAAGLALEALAGVVALAESNIEQAKIGLVKNDIIKLFDNLESYEDGSLYFDEKPVDASRGNGGSLSATSSVVRGVKAFAAVIPGKLNIPEDKVVGIANFFLSIGVPGSSIEIYHQLDSLGNLEDNSITIPLVLSIPATVLSLTSREHLKVMISTVLGSAAPPMVVNLVRAVKLDSKDAPIVHDQELPFNLENSAYTMDFLSKGVDVGKYYLTFEVLPHNVEHGKTYSAGGQVQVLITVTGIIKISDAEIAVLDTDTGSAETLKKLDLSKEETVLLSANHLQRLHLSFQMTTPPGGFFKPHQVFLRLRHESKVEHIFLLKSSGKKFESLLDFLGLVENFYYLSGAYTIELAVGDSTMENSFLKLLGYLELDLPEAPENAARPRPAAIDIASRFAPAAEITHIFRTPEKLPPSELSYAFLTLTLLPFLGFLIGLWSLGVNLKFFPTAGLPLVSAILFHSGILAVLVLYILFWVKLNLFTTLKYLGFLGLFLVAVGHSILSHLAYISSKVKSN*

Protein Length: 698

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTATTGAAGCCAAAGTCGTCTATGGCTCATTGATCATCCGATTTTTCACTCTCGCC_-_ATGGGATCGACAGAAATGGCTGTGAAGGCTCTCGTTTTTGCGATTATGATATGCGGGGCAGTTGCTCTATTCGAACCTGTATCAGAAACCCACAGATCTGCAGCTATTGAGTTATTTATTCCCAAAGAGGATGGATCTTATGGAAGCCTGGAGGAAACCTATCAGGCATTGCGGTCTTTTCAGGTTCTTGGCATCGAAGCGAAGAATTCTGACCAGAAGACATGCCAACTGGCATTTGAAGCACTGAAATATTCTTCTGCACAAATCAAAGACATTTATTATGCACTCAAAATCACTGAGATTTTGAAGTGTCCATTTAGTGATGCCGATGTAGTCAAGGGCATTGCATCAAAGCTGTTATCACACATAAAGGGTGCTAACTCTTTGCTTGATTACTATTACCCTCTCAGTTGTTTGGTCTCTATCAAGAATCAGGATTTGGCATCTGAAAGTGGCATTATTCTGGAGGATGCCAGCGGTATTTTTCAATCGATCAAGAGTTTAAGTAAAAATGATGGAACATGGCGATATACATCTAGTGAGGGTGAATCTAGTCCCCATGCTGCTGGGCTTGCCTTAGAAGCACTTGCTGGGGTCGTAGCATTGGCAGAGTCTAACATTGAACAGGCTAAGATTGGATTGGTTAAGAATGACATAATCAAACTGTTTGATAACCTTGAAAGTTATGAGGATGGGTCATTATACTTTGATGAGAAGCCAGTTGATGCTAGTAGGGGAAATGGAGGGTCACTCTCAGCTACCTCTTCCGTTGTGCGTGGAGTTAAAGCCTTTGCAGCAGTTATTCCTGGGAAGCTAAATATTCCAGAAGATAAAGTAGTAGGTATTGCAAACTTCTTCCTCAGTATTGGTGTTCCAGGAAGTTCCATTGAAATCTATCATCAACTTGATTCCTTGGGCAACTTGGAGGATAACAGCATTACTATTCCTCTGGTCCTATCAATCCCTGCTACTGTACTTTCATTGACATCAAGGGAGCATTTGAAGGTTATGATTAGCACTGTGCTGGGATCTGCAGCACCTCCTATGGTGGTCAATCTTGTTCGTGCTGTCAAATTAGATTCCAAAGATGCTCCTATAGTTCATGACCAGGAACTTCCGTTCAATCTGGAGAATTCAGCTTACACAATGGACTTTCTTTCCAAGGGAGTTGATGTGGGAAAATATTATTTGACTTTTGAAGTCTTGCCTCATAATGTTGAACATGGTAAAACCTACTCTGCTGGAGGGCAAGTTCAAGTGCTGATCACTGTCACTGGCATTATCAAAATCAGCGATGCTGAAATAGCTGTGCTAGATACTGATACTGGGAGTGCAGAGACTCTGAAAAAACTTGATCTGTCAAAAGAAGAAACTGTGTTGTTGTCTGCAAATCACTTACAGCGGCTGCATCTCTCGTTCCAGATGACTACACCTCCTGGTGGCTTTTTTAAACCCCATCAGGTGTTCCTCAGGTTAAGACATGAAAGTAAAGTGGAACATATATTTTTACTGAAATCTTCTGGAAAGAAGTTTGAGTCATTGCTGGATTTTCTCGGCCTGGTTGAAAATTTTTACTACCTTTCTGGGGCATATACCATTGAGCTTGCTGTGGGCGATTCAACTATGGAAAATTCATTTTTAAAGTTGTTGGGCTATCTGGAGCTGGACTTACCAGAGGCTCCAGAAAATGCAGCTCGTCCTCGACCAGCAGCTATTGATATTGCTTCAAGATTCGCACCTGCAGCTGAGATAACACATATTTTCCGGACACCTGAAAAGCTTCCTCCATCTGAGCTCTCTTATGCATTTTTGACTCTTACTTTATTGCCTTTCCTTGGATTTCTAATTGGGCTTTGGAGTTTAGGGGTGAATTTAAAATTTTTTCCCACAGCTGGCCTGCCGTTGGTCTCAGCCATATTATTCCACAGTGGTATACTGGCGGTGCTGGTCCTATATATTCTTTTCTGGGTCAAGTTAAATCTCTTCACCACGTTGAAGTATCTTGGTTTCCTTGGACTCTTTCTGGTTGCGGTGGGCCATAGTATACTGTCCCACCTGGCTTATATTTCTTCAAAAGTGAAGTCGAATTGA___AGATGTTGAGATTTTTTCTTTGTGCCAGATCTGGCCACAGTTACAATTTTGTTAGATCAAAAGGATAAATCCAGCGTAAATGCAAATTTCAGATTCTCTTGTTTAAATGAGAAAAGCACATTAATGTAAGTGATAAATTGCAAAGAAGGTGAAAACGTTGAGGAGCAATAAGCTTGTGAATTTTATATGTTGCAGTGGTTTATGCATTTCAAATGCAAATATAATTAGTTTAATGAGAAAACACATGGAATTATGAGGCATTCTGGTATGCATTAATGTTTTGGTTAATAGATTGTGGAT

Fln Alignment:

sp_v1.1_unigene17040___SLEETYQALRSFQVLGIEAKNSDQKTCQLAFEALKYSSAQIKDIYYALKITEILKCP
D5AAK3_______________SLGGTYKALKSFRVLGIEAKNSGQP-CQLAFEALKFSSAQIKDIFYALKITRTLKCP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
397	13	86			0.999973
1073	66		33		0.997452
1935	25	75			0.996473
1937			25	75	0.996473
1938			25	75	0.996473
2067		2	5	92	0.992495
2070	94		5		0.9982
2071		92		5	0.992495
2072		94	5		0.9982
2075		5	94		0.9982
2080	94			5	0.9982
2086	5			94	0.9982
2319	33		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain