SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17024

Length: 2564 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17024
CCCACGTCGGGCATGTTCCCAAAATCAGCGGCGTTGGTGGAAGGAAGGGACCGTTGAATGGCAAAAGTCGTTAAATTCCGGTAGACCCGTGAAACAGGAGACAGAGGGGCGCCATTGTACCCTCGACCCGAGTAGTAGAGGATCCAGATAAACAACAATAATAAGGGCAATTACTTTTTATGTATGTGCGCTCATTTATTAATAAATCCCTCGTGACCTTGGCTGATTCGGAACTTCATACTCTGGTGACTCCCAAGATTGGGAATGGACAACATGGTGCTTGATGTAGACGAGTACGATTGATGGTGGGCATACTGACATAATGATCTCAGAGGCAGCTTAACCTCATTTTCACTGTTGGGTACTCGATAATTTTGGCACCGGAGAACCAGATCTGGTGTCTGGCAGCGCTGGCTGTGGGAGATTAGAGGTGGGTCCCATTGCTTTTAGCTGTGAGAGTTTTATTTAGAGAAGTTTCATTGAATAAACAAATCTGGATCCACTCTGTCAGTGGGCTTGGCCTAGGCACTAGCAGTTCGTGTTTTATATAAATTTTGGAGGTCATCAGCAGGATCATTCAGGTAAGAGGCCTGTTCAGGTTTCTGTAATTTTGTTTAAAACATAGATATATAGAATAGCAGATAAAGGGATCTGGGATTGTGATTTTTTGGGGTTTCAATGAGGGAGAGCGTCAAGAGGGGTCTACCTTCTGTGAGGGGGCCTGCAAATGGTAGATCTTTAGCTCTGCCCAAAGCGAGGTCGATTCAGAAAACGTTTAACAATTTGAAAATTACAATTTTGTGTGGTTTCGTAACGATACTCGTTTTGAGGGGCACCATAGGAGTTGGCAATTTGGGTGGCCAGGGCACGGGGGATGGTGGAGCAAGCCAAAAGGTGGCAGAGGAAAATGCCAGGGCGCTAGAAGAGATCAGGAGGAAGGAAGATCCTGATGAAGAGAATGAGCTGGGGATGCAGATTGATAGTAATGCAACCTATCCTAATGTAACTTATACTTTGGGACCCCGGATCAGTGACTGGGATCAGCAAAGAATAACTTGGATCAAGGAAAATCCTCAATTTCCCAGTTATGTGAATGGAAAACCTAGGATTTTGCTTGTCACTGGGTCCCAACCCAACCCATGTGATAGCCCAGTTGGAGATCATTATTTGCTAAAGGGAATCAAGAACAAGATTGATTACTGCAGGCTTCATGGCATTGAGATTGTCTATAACATGGCTCATTTGGATAAGGAGATGGCTGGTTATTGGGCCAAGTTGCCTCTGCTCCGAAGGCTTATGTTGTCACATCCAGAAGTGGAATGGATATGGTGGATGGACAGTGATGCTATGTTCACTGATATGGTTTTTGAGCTGCCGATGGATAAATACAAGAACTATAATTTTGTTCTCCATGGCTGGGAGAATTTGGTTTATGGCAAACAGTCTTGGATCGGATTGAATACTGGCAGCTTCCTTATTCGGAACTGTCAATGGTCTTTAGATATATTGGACGCATGGGCACCAATGGGTCCAAAGGGTAAGATCAGAGAAGAAGCGGGGAGGGTTTTGACTGCTCATTTGGAGGGTAGACCGGCATTTGAGGCAGATGATCAATCTGCCCTGATATATTTATTGATCTCTCAAAAAAAGCTCTGGGGTGACAAAGTGTTTCTGGAAAGCTCATATTTTCTTCATGGTTTTTGGGTTGTTGTGGTGGACAAGTACGAGGACATGATCCGTACCTACCATCCTGGACTTGGAGATGAAAGGTGGCCTTTTGTCACTCATTTTGTGGGATGCAAGCCTTGTGGTAGCTACGGAGATTATCCTGTTGAGCGCTGTCTGAAGAGTATGGAAAGGGCCTTCAATTTTGCAGACAACCAAATACTTCAGATTTATGGTTTCAAGCACAAGAGTCTGAATACGGCAAAAGTCAAACGGACAAGGAATGAAACTGCATCACCCCTTGAAGTCAAAGATGAGTTCAACCTCTTGCATCCCTCATTCACTGCTTCAAAGAGCCTATAATGCATTTAATCATGCATTCATAGATATCTTTGCAAATAGAGAAGCCTTTCTTTAGACATTTTCCAAACTTTGTAAGATGAATGCGGTGGTGGTAATCTAATTTATTCTTTTCTTTTGCTATATCATAAGGGAATATGTTTGTTAACAACATTGCAGTTTTGGATTCGAATACAATTATGAAATGCTGACAGGTTTTCTAGTCAGTCTGGTTCATATATAACAGGAATATGTCCTTTCTCTATAAGCCTGAGTTGATTTGGTTTAGCAGTGCCTTATTAATGTTGATTGAAGACTAACACTTAATCATTGTTTAGTTTTGTTTATCTTGAGCTGGAAATGTTTTATCCTTTTCAAGGCTAGGAATGCCCTAATGTGGGATCTAATGCTATCACACAAGGATCAAAGTCTGATCTAACTGCAACGCTTGTTTATAGATTTTATGATTAACTTTGACCAAGGTTTAATTACTCCCAAGCCTTTAGCTGTAATAATGGGGGATCTGTTAATTGTTATTGATGGCATATAATTTTTGCACA

Ace file of the UniGene sp_v1.1_unigene17024

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan 6-xylosyltransferase, putative (EC:2.4.2.39); K08238 xyloglucan 6-xylosyltransferase [EC:2.4.2.39]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	galactosyl transferase gma12 mnn10 family protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan 6-xylosyltransferase.	EC:2.4.2.39	-	0.0	80%
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	80%
Blast2go	N-Glycan biosynthesis	00510	80%
Blast2go	Mucin type O-Glycan biosynthesis	00512	80%
Blast2go	Various types of N-glycan biosynthesis	00513	80%
Blast2go	Other types of O-glycan biosynthesis	00514	80%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	80%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	80%
Blast2go	Lipopolysaccharide biosynthesis	00540	80%
Blast2go	Peptidoglycan biosynthesis	00550	80%
Blast2go	Glycerolipid metabolism	00561	80%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	80%
Blast2go	Sphingolipid metabolism	00600	80%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	80%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	80%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	80%
Blast2go	Carotenoid biosynthesis	00906	80%
Blast2go	Zeatin biosynthesis	00908	80%
Blast2go	Flavonoid biosynthesis	00941	80%
Blast2go	Anthocyanin biosynthesis	00942	80%
Blast2go	Flavone and flavonol biosynthesis	00944	80%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	80%
Blast2go	Betalain biosynthesis	00965	80%
Blast2go	Biosynthesis of type II polyketide products	01057	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xyloglucan 6-xylosyltransferase.	EC:2.4.2.39	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	80%
Blast2go	xyloglucan 6-xylosyltransferase activity	GO:0033843	Molecular Function	80%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	80%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Galactosyl transferase	IPR008630	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUJ1

Fln msg:

Fln protein: MRESVKRGLPSVRGPANGRSLALPKARSIQKTFNNLKITILCGFVTILVLRGTIGVGNLGGQGTGDGGASQKVAEENARALEEIRRKEDPDEENELGMQIDSNATYPNVTYTLGPRISDWDQQRITWIKENPQFPSYVNGKPRILLVTGSQPNPCDSPVGDHYLLKGIKNKIDYCRLHGIEIVYNMAHLDKEMAGYWAKLPLLRRLMLSHPEVEWIWWMDSDAMFTDMVFELPMDKYKNYNFVLHGWENLVYGKQSWIGLNTGSFLIRNCQWSLDILDAWAPMGPKGKIREEAGRVLTAHLEGRPAFEADDQSALIYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPLEVKDEFNLLHPSFTASKSL*

Protein Length: 451

Fln nts: CCCACGTCGGGCATGTTCCCAAAATCAGCGGCGTTGGTGGAAGGAAGGGACCGTTGAATGGCAAAAGTCGTTAAATTCCGGTAGACCCGTGAAACAGGAGACAGAGGGGCGCCATTGTACCCTCGACCCGAGTAGTAGAGGATCCAGATAAACAACAATAATAAGGGCAATTACTTTTTATGTATGTGCGCTCATTTATTAATAAATCCCTCGTGACCTTGGCTGATTCGGAACTTCATACTCTGGTGACTCCCAAGATTGGGAATGGACAACATGGTGCTTGATGTAGACGAGTACGATTGATGGTGGGCATACTGACATAATGATCTCAGAGGCAGCTTAACCTCATTTTCACTGTTGGGTACTCGATAATTTTGGCACCGGAGAACCAGATCTGGTGTCTGGCAGCGCTGGCTGTGGGAGATTAGAGGTGGGTCCCATTGCTTTTAGCTGTGAGAGTTTTATTTAGAGAAGTTTCATTGAATAAACAAATCTGGATCCACTCTGTCAGTGGGCTTGGCCTAGGCACTAGCAGTTCGTGTTTTATATAAATTTTGGAGGTCATCAGCAGGATCATTCAGGTAAGAGGCCTGTTCAGGTTTCTGTAATTTTGTTTAAAACATAGATATATAGAATAGCAGATAAAGGGATCTGGGATTGTGATTTTTTGGGGTTTCA_-_ATGAGGGAGAGCGTCAAGAGGGGTCTACCTTCTGTGAGGGGGCCTGCAAATGGTAGATCTTTAGCTCTGCCCAAAGCGAGGTCGATTCAGAAAACGTTTAACAATTTGAAAATTACAATTTTGTGTGGTTTCGTAACGATACTCGTTTTGAGGGGCACCATAGGAGTTGGCAATTTGGGTGGCCAGGGCACGGGGGATGGTGGAGCAAGCCAAAAGGTGGCAGAGGAAAATGCCAGGGCGCTAGAAGAGATCAGGAGGAAGGAAGATCCTGATGAAGAGAATGAGCTGGGGATGCAGATTGATAGTAATGCAACCTATCCTAATGTAACTTATACTTTGGGACCCCGGATCAGTGACTGGGATCAGCAAAGAATAACTTGGATCAAGGAAAATCCTCAATTTCCCAGTTATGTGAATGGAAAACCTAGGATTTTGCTTGTCACTGGGTCCCAACCCAACCCATGTGATAGCCCAGTTGGAGATCATTATTTGCTAAAGGGAATCAAGAACAAGATTGATTACTGCAGGCTTCATGGCATTGAGATTGTCTATAACATGGCTCATTTGGATAAGGAGATGGCTGGTTATTGGGCCAAGTTGCCTCTGCTCCGAAGGCTTATGTTGTCACATCCAGAAGTGGAATGGATATGGTGGATGGACAGTGATGCTATGTTCACTGATATGGTTTTTGAGCTGCCGATGGATAAATACAAGAACTATAATTTTGTTCTCCATGGCTGGGAGAATTTGGTTTATGGCAAACAGTCTTGGATCGGATTGAATACTGGCAGCTTCCTTATTCGGAACTGTCAATGGTCTTTAGATATATTGGACGCATGGGCACCAATGGGTCCAAAGGGTAAGATCAGAGAAGAAGCGGGGAGGGTTTTGACTGCTCATTTGGAGGGTAGACCGGCATTTGAGGCAGATGATCAATCTGCCCTGATATATTTATTGATCTCTCAAAAAAAGCTCTGGGGTGACAAAGTGTTTCTGGAAAGCTCATATTTTCTTCATGGTTTTTGGGTTGTTGTGGTGGACAAGTACGAGGACATGATCCGTACCTACCATCCTGGACTTGGAGATGAAAGGTGGCCTTTTGTCACTCATTTTGTGGGATGCAAGCCTTGTGGTAGCTACGGAGATTATCCTGTTGAGCGCTGTCTGAAGAGTATGGAAAGGGCCTTCAATTTTGCAGACAACCAAATACTTCAGATTTATGGTTTCAAGCACAAGAGTCTGAATACGGCAAAAGTCAAACGGACAAGGAATGAAACTGCATCACCCCTTGAAGTCAAAGATGAGTTCAACCTCTTGCATCCCTCATTCACTGCTTCAAAGAGCCTATAA___TGCATTTAATCATGCATTCATAGATATCTTTGCAAATAGAGAAGCCTTTCTTTAGACATTTTCCAAACTTTGTAAGATGAATGCGGTGGTGGTAATCTAATTTATTCTTTTCTTTTGCTATATCATAAGGGAATATGTTTGTTAACAACATTGCAGTTTTGGATTCGAATACAATTATGAAATGCTGACAGGTTTTCTAGTCAGTCTGGTTCATATATAACAGGAATATGTCCTTTCTCTATAAGCCTGAGTTGATTTGGTTTAGCAGTGCCTTATTAATGTTGATTGAAGACTAACACTTAATCATTGTTTAGTTTTGTTTATCTTGAGCTGGAAATGTTTTATCCTTTTCAAGGCTAGGAATGCCCTAATGTGGGATCTAATGCTATCACACAAGGATCAAAGTCTGATCTAACTGCAACGCTTGTTTATAGATTTTATGATTAACTTTGACCAAGGTTTAATTACTCCCAAGCCTTTAGCTGTAATAATGGGGGATCTGTTAATTGTTATTGATGGCATATAATTTTTGCACA

Fln Alignment:

sp_v1.1_unigene17024___SLALPKARSIQKTFNNLKITILCGFVTILVLRXXXXXXXXXXXXXXXXXASQKV----AEENARALEEI-----RRKEDPDEENELGMQIDSNATYPNVTYTLGPRISDWDQQRITWIKENPQFPSYV-NGKPRILLVTGSQPNPCDSPVGDHYLLKGIKNKIDYCRLHGIEIVYNMAHLDKEMAGYWAKLPLLRRLMLSHPEVEWIWWMDSDAMFTDMVFELPMDKYKNYNFVLHGWENLVYGKQSWIGLNTGSFLIRNCQWSLDILDAWAPMGPKGKIREEAGRVLTAHLEGRPAFEADDQSALIYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPLEVKDEFNLLHPSFTASK
A9NUJ1_______________SLGARRVRQIQKAMQNAKVTLLCLFVTVLVLRGTIGAGKFGTPEQDFAEIREHLIVGRRGEPHRVLTEVVAENSSNKSPPVVEEE--VEEPEVERDPNVPYSFGPKISDWDDQRREWLAENPAFPNFLPGGRPRILLVTGSAPAPCENPVGDHFLLKSIKNKIDYCRLHGIEIFYNMAHLDREMSGFWAKLPLIRKLMLAHPEVEFIWWMDSDAMFTDMVFELPFERYKNHNFIMHGWEELVYNRKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRLDAGKLLTRSLVGRPEFEADDQSALVYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKYQPGLGDHRWPLVTHFVGCKPCGKFGDYPVAQCLKQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
509		17		82	1.0
517	18		81		1.0
518		18	81		1.0
529			81	18	1.0
1001		88	11		0.923564
1002		11		88	0.923564
1008	88		11		0.923564
1010		90	10		0.90298
1012			10	90	0.90298
1014		10		90	0.90298
1016		90	10		0.90298
1017			11	88	0.923564
1018		12		87	0.992554
1019		12		87	0.992554
1642			16	83	0.994512
1643		83	16		0.994512
1644			16	83	0.994512
1672		14		85	0.993533
1686	87		12		0.992554
1772		4	95		0.995482
1777	4	95			0.995881
1780		4		95	0.995881
1789	96			4	0.99411
1790		96	4		0.99411
1794		2		93	0.970804
1796		4		95	0.994598
1887		94		5	0.998397
2092	88		11		0.923564
2108	83			16	0.994512
2112	16			83	0.994512
2125		20	80		0.995493
2127		20		80	0.995493
2161	87		12		0.992554
2162	87		12		0.992554
2274	12		12	75	0.975346
2277	87		12		0.992554
2279		12	87		0.992554
2281		87		12	0.992554
2284	87		12		0.992554
2285		12	87		0.992554
2288		12	87		0.992554
2290		12		87	0.992554
2292		12		87	0.992554
2293	14		85		0.993533
2356		16		83	0.994512
2357	83		16		0.994512
2360			16	83	0.994512
2364		16	83		0.994512
2367			83	16	0.994512
2370	80		20		0.995493
2371	80	20			0.995493
2376		25		75	0.996473
2377	25			75	0.996473
2378	75	25			0.996473
2381	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain