SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17011

Length: 1666 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17011

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Trans-2-enoyl-CoA reductase n=2 Tax=rosids RepID=A9XUG8_GOSHI	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	synaptic glycoprotein sc2	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-oxo-5-alpha-steroid 4-dehydrogenase.	EC:1.3.99.5	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Steroid hormone biosynthesis	00140		0.0	86%
Blast2go	Trans-2-enoyl-CoA reductase (NADPH).	EC:1.3.1.38	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	86%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	sphingolipid metabolic process	GO:0006665	Biological Process	86%
Blast2go	3-oxo-5-alpha-steroid 4-dehydrogenase activity	GO:0003865	Molecular Function	86%
Blast2go	trans-2-enoyl-CoA reductase (NADPH) activity	GO:0019166	Molecular Function	86%
Blast2go	fatty acid elongase activity	GO:0009922	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	fatty acid elongase complex	GO:0009923	Cellular Component	86%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0I4

Fln msg:

Fln protein: MKVSVVSRSGREIIKGGIDLSDNATVDDLKASIQQRVKKYYTARQRLTLPQSGKGKPVVLERGKRLKDYFEKDEGKLVVVFKDLGPQVAYSTLFFWEYVGPLFIYPIFYYFPVYKYFGYPAERVIHPVQTYAMYYWCFHYAKRILETFFIHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQMKIGFGLGIVCQLANFYCHILLRNLRSPEGKGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLVVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL*

Protein Length: 310

Fln nts: ATGGGGAAGGCATCATGGTTGGGTAATTGAATTTTTGTCGATAAATTTCGTCGTGACCTTGGCTGTCACATCCAATTGAATTTCATTTCGTCAAGTTCTCACCAATGCATTTAGCAACTCCACCCTCCAAACCAGCCACAAAACAAATACACACCAACATTGCTTTACTCACACCGTAACAAAACCGATTTTCGATCTCCAATGGTCTGTCATACCCATTTAATGCTGCATTCACTCAAAGCCACAGCACAGGCTTCACTCATCAATACGCCCACTTGTTCTGCCGCCAAACTTCACCAATAGGCAACCATTCATTCATTGAGGCCAACGCCCAACACTATATTTTGTGCTTCAGCCAATCCCTTGCAGTCACACCGTTAACAGAGGGGATTGTGAAG_-_ATGAAGGTCTCCGTGGTATCTCGAAGTGGCAGAGAAATTATCAAGGGTGGCATCGATCTGAGTGATAATGCCACTGTGGATGATCTGAAAGCCTCGATTCAACAAAGAGTCAAGAAATATTATACGGCCCGGCAGCGACTTACTCTGCCACAATCTGGAAAAGGGAAACCAGTTGTTCTGGAAAGAGGCAAGAGGCTCAAAGATTATTTTGAAAAAGATGAGGGAAAGTTAGTTGTAGTGTTCAAGGATTTAGGGCCACAGGTAGCCTACAGCACTCTTTTTTTCTGGGAATATGTCGGCCCTCTGTTCATTTATCCCATCTTCTATTACTTCCCTGTCTACAAGTACTTTGGTTATCCTGCAGAAAGAGTTATACACCCAGTTCAGACATATGCAATGTACTATTGGTGCTTTCACTATGCCAAACGCATTTTAGAGACCTTTTTTATTCACAGGTTCAGCCATGCAACTTCACCACTCTCTAATGTGTTTAGAAACTGCTGTTACTACTGGACCTTTGGTGCAGTCATAGCTTATTTTGTCAACCATCCCCTCTACACCCCTGTGAGTGAGAAGCAAATGAAAATTGGGTTTGGGCTGGGGATTGTATGTCAGTTAGCAAACTTTTACTGCCATATTTTGTTGAGAAATCTTAGGAGCCCCGAAGGTAAAGGAGGATATCAAATTCCAAGTGGATTCCTGTTTAATATAGTCACATGTGCTAACTACACCACTGAGATCTATCAATGGTTGGGATTCAATATCGCAACACAGACAGTTGCTGGCTACACCTTTCTGGTTGTAGCAACCTTTATTATGACTAACTGGGCTCTTGCCAAGCACCGCCGTTTGAAGAAGTTGTTTGATGGCAAAGATGGCAGACCCAAATATCCAAGGCGATGGGTGATATTACCTCCTTTCCTATGA___AAAGGATGCTTATTAATTCTGGGGACACTTTCGTTGATTTCTATACTGAATTGTCAATAAAACTTGGGCCCTTTTCTGGTTCTACAATGTCTAAAATTTGGTGGCTTTAGCATGATCGGACGTTGTAATTGACTGTTTTGTGGCTGTAATTTATTTAATTGTGCTTGCTTAAGAAGCTAGTAAGAGTGAATTTCTCACCTGGGTATGTTCCCGGTATTTCAAATGGAGTATTTTTAATTACTATTTTTGCTGTTTTTTGAAGATCTGTTCTACATGTACCATCCTGGTACTTGCTTTGCTATTTTCTCACATATAACTGCTGCTTGCATTAGTGTGATTAC

Fln Alignment:

sp_v1.1_unigene17011___MKVSVVSRSGREIIKGGIDLSDNATVDDLKASIQQRVKKYYTARQRLTLPQSGKGKPVVLERGKRLKDYFEKDEGKLVVVFKDLGPQVAYSTLFFWEYVGPLXXXXXXXXXXXXXXXGYPAERVIHPVQTYAMYYWCFHYAKRILETFFIHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQMKIGFGLGIVCQLANFYCHILLRNLRSPEGKGGYQIPSGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLVVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
A9P0I4_______________MKVSVVSRSGREIIKGGIDLSDNATVDDLKSSIHQRVKKYYPARQRLTLPQPGKGKPVVLERGKRLKDYFEKDEGKLVVVFKDLGPQVAYSTLFFWEYVGPLFIYPIFYYFPVYKYFGYPAERVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLSNVFRNCCYYWTFGAVIAYFVNHPLYTPVSEKQIKIGFGLGIVCQVANFYCHILLRNLRIPGGKGGYQIPGGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYTFLAVATFIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
366	10	90			0.999898
371	93		6		0.99903
373			6	93	0.99903
525	57		42		1.0
636	16		83		0.994512
1556	33		66		1.0
1630		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain