SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17010

Length: 2410 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17010
ATGGGGAGTGGACGCGAAGACCTAATTCCAAAGCAATTAATATCTAGAACTATCGTCGTGACCTTCGCTGACACTCACTATTTCTTTATCGCAGATGTATTAGTTGCTATTTCAGTTGTATGTGGCTTGATTCTTGCCCTGCGGCTAACTGGATCCTCGGCGCTTCGTTTATGCTCATCTCTATCTCGGTGTTATTAGCACAAAATCTAGCAAGATAGTTAGGTTTGAAGAAAGAAATGGCTGATGAAGCAAAATCAAAAGGAAATGCTGCGTTTTCTTCAGGAAACTACGAGGAAGCTATAAAACATTTCTCTGAAGCTATAGCTCTTGCTCCGACCAATCATGTTTTATATTCAAATCGTTCTGCAGCATATGCTTCATTAAATAAGTATAATGAAGCTCTTCAGGATGCTAAGAAGACAGTGGAAATTAAGGCAGATTGGTCCAAGGGCTACAGCAGGCTTGGGGCAGCATATGTTGGGCTTGGAAAATTTGATGATGCAATTTCTTCTTACAAAAAGGGCCTGGAGTTTGATCCTTCAAATGAAGCATTAAAATCAGGCCTTGCTGATGCACAGGCAGCAAGTAGATCTCGTGCTGCATCATCTCCATTTGGAAATATATTCCAGGGGCCAGAAGTGTGGGCAAAATTAACGGCTGACCCAAAAACAAGATTATATTTGCAGCAACCTGATTTTGTTAAGATGATTCAAGATGTTCAGAAAAATCCTAACAACATTAATATGTATCTTAATGATCAACGCATGATGCAGGTTTTGGGTGTGTTACTAAATGTTAACTTACGTAATGCCACATCAGAGGAGGATGCTTTTGAGCATACTAGTTCACCCAAGCCACAGCCAAAACGAGAACCAGAACCTCAGCCAGAGTCAGAGCCAGAACCAATGGATATTCCAGATGAGGAGAAAGAGAAGAAGGCTCGGAAAACAGAGGCACAGAAGGAAAAGGAACTTGGAAATGCAGCTTATAAGAAAAAAGATTTTGAGGTTGCTATTCAGCATTATTCGAAAGCAATGGATCTGGATGATGAAGATATCTCCTTCCTAACAAACAGAGCAGCTGTCTATTTGGAAATGGGGAAGTATGAAGATTGCATTAAAGACTGTGACAAGGCTGTTGAAAGAGGGAGGGAGCTTCATTCAGATTATAAAATGGTTGCACGGGCTTTGACTAGAAAAGGAACTGCATTTGTAAAGATGGCTAAATGTTCAAAGGACTATGAGCCAGCAATTGAAACTTTCCAGAAAGCACTTACAGAACATCGTAATCCAGATACATTGAAGAAACTTAATGAAGCTGAGAAAGCAAAGAAAGATTTGGAACAACAGGAAGATTTTGATCCAAAGTTGGCAGATGAAGAGCGGGAGAAAGGAAATGAATTCTTTAAGCAGCAGCAGTATCCAGAGGCTATAAAGCATTACACTGAAGCTCTTAGAAGAAATCCCAATGATGCAAGGGTATACAGTAACAGAGCAGCTTGCTATACGAAGCTTGCAGCTTTGCCAGAAGGTCTCAAGGATGCAAATAAGTGTATTGAGTTGGATCCATCATTTACAAAAGGCTATTCAAGGAAAGCTGCTATTCAGTTCTTCATGAAAGAATATGACAAAGCCTTGGAAACCTATCAGGAAGGTCTCAAACTTGATGAAAACAACCAGGAACTGTTAGAAGGTGTCCGGAGATGTATTGAGCAAATCAACAAAACCAACAGGGGTGATATAAGCCCTGAGGAAATGAAGGAGAGACAGGCAAAAGCAATGCAAGATCCAGATATTCAGCATATTCTTTCGGATCCTGTTATGAGACAGATTCTAATGGATTTCCAAGAGAACCCAAAGGCAGCACAGGATCATCTGAAGAATCCTGAAGTAATGCATAAGATTCAGAAGCTTGTGAGTGCGGGTATTGTACAAGTGAGATGAAGAGGGCCATTGTTTTGTTCAGAAAGCTCTTTCTATGAATCTGTAGAGAACACTTGCCTTTTGTTTGTATCTGAAAGAGCCTTGAATAAAATGCATGCCAAAATTTATTCTAGGAACTGAGATTTGGATTTATATAGTTTTTGGCAAGCTGCTGTAGGAACAGCTGCTGTACTTTTTGATGGGTAGAAATGCCGGATGAAAATCTGGTAAATTATCTGTTTTTTTGACCGTAATATCATGTTCAAGCATTGTATCTTTTTATTGGTCTTGAGAAAACTGCTCCGTGTAACAGTAATCAATCCTGTCCAATTGCTATAGGATTGTTGAATATTGCAAAATCTCATGAGTGATTTCAAGTTAGTTGGTCATTATGTGCCTGTGTTATGATTCCCCAGAAATGAATGATTCAAATCCCTCTTTAAAATGGGGCCTTGTGACGAAAGAAGGGCCCACTTGAACAGCAAGAG

Ace file of the UniGene sp_v1.1_unigene17010

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 70 (HSP70)-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9RBP6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	heat shock protein 70 -interacting	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	86%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	86%
Blast2go	response to heat	GO:0009408	Biological Process	86%
Blast2go	binding	GO:0005488	Molecular Function	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH2

Fln msg:

Fln protein: MADEAKSKGNAAFSSGNYEEAIKHFSEAIALAPTNHVLYSNRSAAYASLNKYNEALQDAKKTVEIKADWSKGYSRLGAAYVGLGKFDDAISSYKKGLEFDPSNEALKSGLADAQAASRSRAASSPFGNIFQGPEVWAKLTADPKTRLYLQQPDFVKMIQDVQKNPNNINMYLNDQRMMQVLGVLLNVNLRNATSEEDAFEHTSSPKPQPKREPEPQPESEPEPMDIPDEEKEKKARKTEAQKEKELGNAAYKKKDFEVAIQHYSKAMDLDDEDISFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELHSDYKMVARALTRKGTAFVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEDFDPKLADEEREKGNEFFKQQQYPEAIKHYTEALRRNPNDARVYSNRAACYTKLAALPEGLKDANKCIELDPSFTKGYSRKAAIQFFMKEYDKALETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSDPVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR*

Protein Length: 570

Fln nts: ATGGGGAGTGGACGCGAAGACCTAATTCCAAAGCAATTAATATCTAGAACTATCGTCGTGACCTTCGCTGACACTCACTATTTCTTTATCGCAGATGTATTAGTTGCTATTTCAGTTGTATGTGGCTTGATTCTTGCCCTGCGGCTAACTGGATCCTCGGCGCTTCGTTTATGCTCATCTCTATCTCGGTGTTATTAGCACAAAATCTAGCAAGATAGTTAGGTTTGAAGAAAGAA_-_ATGGCTGATGAAGCAAAATCAAAAGGAAATGCTGCGTTTTCTTCAGGAAACTACGAGGAAGCTATAAAACATTTCTCTGAAGCTATAGCTCTTGCTCCGACCAATCATGTTTTATATTCAAATCGTTCTGCAGCATATGCTTCATTAAATAAGTATAATGAAGCTCTTCAGGATGCTAAGAAGACAGTGGAAATTAAGGCAGATTGGTCCAAGGGCTACAGCAGGCTTGGGGCAGCATATGTTGGGCTTGGAAAATTTGATGATGCAATTTCTTCTTACAAAAAGGGCCTGGAGTTTGATCCTTCAAATGAAGCATTAAAATCAGGCCTTGCTGATGCACAGGCAGCAAGTAGATCTCGTGCTGCATCATCTCCATTTGGAAATATATTCCAGGGGCCAGAAGTGTGGGCAAAATTAACGGCTGACCCAAAAACAAGATTATATTTGCAGCAACCTGATTTTGTTAAGATGATTCAAGATGTTCAGAAAAATCCTAACAACATTAATATGTATCTTAATGATCAACGCATGATGCAGGTTTTGGGTGTGTTACTAAATGTTAACTTACGTAATGCCACATCAGAGGAGGATGCTTTTGAGCATACTAGTTCACCCAAGCCACAGCCAAAACGAGAACCAGAACCTCAGCCAGAGTCAGAGCCAGAACCAATGGATATTCCAGATGAGGAGAAAGAGAAGAAGGCTCGGAAAACAGAGGCACAGAAGGAAAAGGAACTTGGAAATGCAGCTTATAAGAAAAAAGATTTTGAGGTTGCTATTCAGCATTATTCGAAAGCAATGGATCTGGATGATGAAGATATCTCCTTCCTAACAAACAGAGCAGCTGTCTATTTGGAAATGGGGAAGTATGAAGATTGCATTAAAGACTGTGACAAGGCTGTTGAAAGAGGGAGGGAGCTTCATTCAGATTATAAAATGGTTGCACGGGCTTTGACTAGAAAAGGAACTGCATTTGTAAAGATGGCTAAATGTTCAAAGGACTATGAGCCAGCAATTGAAACTTTCCAGAAAGCACTTACAGAACATCGTAATCCAGATACATTGAAGAAACTTAATGAAGCTGAGAAAGCAAAGAAAGATTTGGAACAACAGGAAGATTTTGATCCAAAGTTGGCAGATGAAGAGCGGGAGAAAGGAAATGAATTCTTTAAGCAGCAGCAGTATCCAGAGGCTATAAAGCATTACACTGAAGCTCTTAGAAGAAATCCCAATGATGCAAGGGTATACAGTAACAGAGCAGCTTGCTATACGAAGCTTGCAGCTTTGCCAGAAGGTCTCAAGGATGCAAATAAGTGTATTGAGTTGGATCCATCATTTACAAAAGGCTATTCAAGGAAAGCTGCTATTCAGTTCTTCATGAAAGAATATGACAAAGCCTTGGAAACCTATCAGGAAGGTCTCAAACTTGATGAAAACAACCAGGAACTGTTAGAAGGTGTCCGGAGATGTATTGAGCAAATCAACAAAACCAACAGGGGTGATATAAGCCCTGAGGAAATGAAGGAGAGACAGGCAAAAGCAATGCAAGATCCAGATATTCAGCATATTCTTTCGGATCCTGTTATGAGACAGATTCTAATGGATTTCCAAGAGAACCCAAAGGCAGCACAGGATCATCTGAAGAATCCTGAAGTAATGCATAAGATTCAGAAGCTTGTGAGTGCGGGTATTGTACAAGTGAGATGA___AGAGGGCCATTGTTTTGTTCAGAAAGCTCTTTCTATGAATCTGTAGAGAACACTTGCCTTTTGTTTGTATCTGAAAGAGCCTTGAATAAAATGCATGCCAAAATTTATTCTAGGAACTGAGATTTGGATTTATATAGTTTTTGGCAAGCTGCTGTAGGAACAGCTGCTGTACTTTTTGATGGGTAGAAATGCCGGATGAAAATCTGGTAAATTATCTGTTTTTTTGACCGTAATATCATGTTCAAGCATTGTATCTTTTTATTGGTCTTGAGAAAACTGCTCCGTGTAACAGTAATCAATCCTGTCCAATTGCTATAGGATTGTTGAATATTGCAAAATCTCATGAGTGATTTCAAGTTAGTTGGTCATTATGTGCCTGTGTTATGATTCCCCAGAAATGAATGATTCAAATCCCTCTTTAAAATGGGGCCTTGTGACGAAAGAAGGGCCCACTTGAACAGCAAGAG

Fln Alignment:

sp_v1.1_unigene17010___KKEMADEAKSKGNAAFSSGNYEEAIKHFSEAIALAPTNHVLYSNRSAAYASLNKYNEALQDAKKTV----EIKADW---SKGYSRLGAAYVGLGK----FDDAISSYKKGLEFDPSNEALK
A9NUH2_______________RKAEAQKEKELGNAAYKKKDFEIAIKHYTKAMDLDDEDISFLTNRAAVYLEMGKYEECIKDCDKAAERGRELHSDYKMIARALTRKGSAYVKMAKCSKDYEPAIETFQKALTEHRNPDTLK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
425			12	87	0.992554
551		10		90	0.90298
879	88		11		0.923564
940	20		80		0.995493
1103	21		78		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain