SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16978

Length: 2123 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16978
ATGGGGGCCGATGGCAGTTGCAATTTTGATGACGCTCCTTAACTGCTCTGCCATAAGCGTAATAATGGTGCCGAACATGGCTATTAATACGTCCACACCTTGGCTGACATGGGCATTGATATGCGTTGAGCTTTGCTGATTGTCTAGCATTTTGAACTCACTTCCAAGCTGCAAGCACAGTATTTGCCAGATTGGCTTGAGGAAGTTCAGTGGTTGAGTCGACATTGCACGTATATTCCATAGCTGCTCCATATTTATTAATCGCCGTTGTGTAGTTAGCCATTGAAGTCCAGTTGAAAGTGACAATATCTTTGAGCTTTTACAAATACCAGTGACATAGGGGCACTGCTGCATAAGTCGCTGAAAGTAAATTAGGGTTCCCAAGATTTTTTCAGATCACCATGGCTCAAGAATCTATCCAACTGGTTAGGCCTAATGGTGTATGTGTTCAGGAGAAAGCTGGTCATGCAAACATGATAACAGTGCTGAAAAAATCATGTGTGTATCCTGCTCAGCCATCTGATCAGAAGTACTGTGACTTGACAACTTTTGATCTTCCTTATGTCACTTTCCACTACAATCAGAAGATTCTGCTGTACCCCTCCCCAAGCCAGGGATTTGCCTCCATGGTGGAATCCTTGAAAAAAGGCCTGTCAGAGGCTTTGGTTCACTTCTACCCTCTTGCAGGGCGACTCTGTTTGGACGAGGAAGGTATTCTGAAGGTGGACTGCAATGATGCTGGTGTGGACTTCATCGAAGCGTCTTCGGATGCTGTGCTGGACGATCTGAAGGACTGTGACTCTTCTTCTGATTTAATGTTGGGTTTTATTCCTTACGTTGACACCTTGAATTCTGATGGGTTTTTTCTCCCTATGGTTGGGGTTCAGGTTACCAAACTCATAGATGGAATTGTAATAGGAATTGCAATCAATCATCTGATAGTGGATGGATACTCAACTTGGCATTTCATGAGTTCTTGGGCTGAGCTCTGCAGGGGTTCAAGTGTCATAAGCCTTCCTCCTTCACACGACCGAGCTCTGGCTAGAAATACCAAAGTCAAGCTGAATATAAATCTTCCAACACAAGAGTCTTATGCAAACGGTACCAAATCTGCAAACGGTACCAAAACTGCAGAACATCATCTGAGAAGCAAGATTTTCCATTTTAGCAAGAAGATGATAGAGGAGATAAAGACCAAGGCTAACAAGAATAAGGAAGGTAAGCCATTCTCTTGCTTCCAGGCTCTTGGAGCCCATCTGTGGCATGGGGTCACAAGGGCCAGAAAATTGGCCCCTGAAGATATAACTGTTTTCACACTTTTCATAGATTGCAGAGCAAGGGTTGACCCCCCATTACCCAGAAACTACTTTGGTAATGCTATTCAGGGCATCTATGGTGTCACTGCAGTGGGTCTTCTTCTGTCAAATGACCAGACATTTGCAGCAAATTTACTGCAACAGGTGATTGACTCTCATGGAGCCAAAGCTATCAGAAAAAAGAATGAAGAATGGGAGCAGAATCCGAAGCTTTATGGATTCAGCGATGCAGGCATAAATTGTGTTGCAGTTGGAAGTTCACCTAGATTTGAAGTGTATGAGAATGATTTTGGATGGGGAAAGCCTGTAAGAGTGAGGAGTGGATGCAATAACAAATTTGATGGCATGGTTTATCTTTACCCTGGCCAGGAAGGTGGGGGCAGTGTGGATGTGGAGATTGCTCTTCTGCCTCAGACAATGGAAATGCTGGAGACTGATACTGAATTCCTGCTCACAAACTGAGAATTCAAGCCTATGCATCTGTTTTATTCCTCGTAGAGCATCTTTGTGGTATTCTTCTAAGATTTGAAAGTCTATGCTGTGGATTTCAAATTATATTTTCTTAACTATTGTCTACGCAGTTAGTAGTAAAGCCTAGACGAACTTGTATTTATGCTGAAGTGTGAGCAACTGTATGCAAGTGTGGTAAGTCATTATAATAAACTTGGAAAGCTTTCCATGTACCCTGGTTCTGGAACTTCTAACTCAAGGCTAATGCTTCTACCATTTTTAAAACTGATAATTGCATTCAAGTGTGGTCTCCCCGATGCTGACTTTAATGTTATTTGGGGATGGTTCAGGTGGACT

Ace file of the UniGene sp_v1.1_unigene16978

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyltransferase homolog n=1 Tax=Petunia x hybrida RepID=Q9MBD4_PETHY	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	anthranilate n-benzoyltransferase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	66%
Blast2go	Tetracycline biosynthesis	00253	66%
Blast2go	Lysine degradation	00310	66%
Blast2go	Arginine and proline metabolism	00330	66%
Blast2go	Histidine metabolism	00340	66%
Blast2go	Tyrosine metabolism	00350	66%
Blast2go	Benzoate degradation	00362	66%
Blast2go	Lipopolysaccharide biosynthesis	00540	66%
Blast2go	Glycerophospholipid metabolism	00564	66%
Blast2go	Ether lipid metabolism	00565	66%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	66%
Blast2go	Toluene degradation	00623	66%
Blast2go	Naphthalene degradation	00626	66%
Blast2go	Aminobenzoate degradation	00627	66%
Blast2go	Ethylbenzene degradation	00642	66%
Blast2go	Butanoate metabolism	00650	66%
Blast2go	Methane metabolism	00680	66%
Blast2go	Limonene and pinene degradation	00903	66%
Blast2go	Diterpenoid biosynthesis	00904	66%
Blast2go	Carotenoid biosynthesis	00906	66%
Blast2go	Anthocyanin biosynthesis	00942	66%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	66%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	66%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	66%
Blast2go	Betalain biosynthesis	00965	66%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	66%
Blast2go	Biosynthesis of type II polyketide backbone	01056	66%
Blast2go	Biosynthesis of terpenoids and steroids	01062	66%
Blast2go	Metabolic pathways	01100	66%
Blast2go	Biosynthesis of secondary metabolites	01110	66%

Source	GOs	Term	Type	Identity
Blast2go	localization	GO:0051179	Biological Process	66%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	66%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	66%
Blast2go	epidermis morphogenesis	GO:0048730	Biological Process	66%
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVH7

Fln msg:

Fln protein: MAQESIQLVRPNGVCVQEKAGHANMITVLKKSCVYPAQPSDQKYCDLTTFDLPYVTFHYNQKILLYPSPSQGFASMVESLKKGLSEALVHFYPLAGRLCLDEEGILKVDCNDAGVDFIEASSDAVLDDLKDCDSSSDLMLGFIPYVDTLNSDGFFLPMVGVQVTKLIDGIVIGIAINHLIVDGYSTWHFMSSWAELCRGSSVISLPPSHDRALARNTKVKLNINLPTQESYANGTKSANGTKTAEHHLRSKIFHFSKKMIEEIKTKANKNKEGKPFSCFQALGAHLWHGVTRARKLAPEDITVFTLFIDCRARVDPPLPRNYFGNAIQGIYGVTAVGLLLSNDQTFAANLLQQVIDSHGAKAIRKKNEEWEQNPKLYGFSDAGINCVAVGSSPRFEVYENDFGWGKPVRVRSGCNNKFDGMVYLYPGQEGGGSVDVEIALLPQTMEMLETDTEFLLTN*

Protein Length: 460

Fln nts: ATGGGGGCCGATGGCAGTTGCAATTTTGATGACGCTCCTTAACTGCTCTGCCATAAGCGTAATAATGGTGCCGAACATGGCTATTAATACGTCCACACCTTGGCTGACATGGGCATTGATATGCGTTGAGCTTTGCTGATTGTCTAGCATTTTGAACTCACTTCCAAGCTGCAAGCACAGTATTTGCCAGATTGGCTTGAGGAAGTTCAGTGGTTGAGTCGACATTGCACGTATATTCCATAGCTGCTCCATATTTATTAATCGCCGTTGTGTAGTTAGCCATTGAAGTCCAGTTGAAAGTGACAATATCTTTGAGCTTTTACAAATACCAGTGACATAGGGGCACTGCTGCATAAGTCGCTGAAAGTAAATTAGGGTTCCCAAGATTTTTTCAGATCACC_-_ATGGCTCAAGAATCTATCCAACTGGTTAGGCCTAATGGTGTATGTGTTCAGGAGAAAGCTGGTCATGCAAACATGATAACAGTGCTGAAAAAATCATGTGTGTATCCTGCTCAGCCATCTGATCAGAAGTACTGTGACTTGACAACTTTTGATCTTCCTTATGTCACTTTCCACTACAATCAGAAGATTCTGCTGTACCCCTCCCCAAGCCAGGGATTTGCCTCCATGGTGGAATCCTTGAAAAAAGGCCTGTCAGAGGCTTTGGTTCACTTCTACCCTCTTGCAGGGCGACTCTGTTTGGACGAGGAAGGTATTCTGAAGGTGGACTGCAATGATGCTGGTGTGGACTTCATCGAAGCGTCTTCGGATGCTGTGCTGGACGATCTGAAGGACTGTGACTCTTCTTCTGATTTAATGTTGGGTTTTATTCCTTACGTTGACACCTTGAATTCTGATGGGTTTTTTCTCCCTATGGTTGGGGTTCAGGTTACCAAACTCATAGATGGAATTGTAATAGGAATTGCAATCAATCATCTGATAGTGGATGGATACTCAACTTGGCATTTCATGAGTTCTTGGGCTGAGCTCTGCAGGGGTTCAAGTGTCATAAGCCTTCCTCCTTCACACGACCGAGCTCTGGCTAGAAATACCAAAGTCAAGCTGAATATAAATCTTCCAACACAAGAGTCTTATGCAAACGGTACCAAATCTGCAAACGGTACCAAAACTGCAGAACATCATCTGAGAAGCAAGATTTTCCATTTTAGCAAGAAGATGATAGAGGAGATAAAGACCAAGGCTAACAAGAATAAGGAAGGTAAGCCATTCTCTTGCTTCCAGGCTCTTGGAGCCCATCTGTGGCATGGGGTCACAAGGGCCAGAAAATTGGCCCCTGAAGATATAACTGTTTTCACACTTTTCATAGATTGCAGAGCAAGGGTTGACCCCCCATTACCCAGAAACTACTTTGGTAATGCTATTCAGGGCATCTATGGTGTCACTGCAGTGGGTCTTCTTCTGTCAAATGACCAGACATTTGCAGCAAATTTACTGCAACAGGTGATTGACTCTCATGGAGCCAAAGCTATCAGAAAAAAGAATGAAGAATGGGAGCAGAATCCGAAGCTTTATGGATTCAGCGATGCAGGCATAAATTGTGTTGCAGTTGGAAGTTCACCTAGATTTGAAGTGTATGAGAATGATTTTGGATGGGGAAAGCCTGTAAGAGTGAGGAGTGGATGCAATAACAAATTTGATGGCATGGTTTATCTTTACCCTGGCCAGGAAGGTGGGGGCAGTGTGGATGTGGAGATTGCTCTTCTGCCTCAGACAATGGAAATGCTGGAGACTGATACTGAATTCCTGCTCACAAACTGA___GAATTCAAGCCTATGCATCTGTTTTATTCCTCGTAGAGCATCTTTGTGGTATTCTTCTAAGATTTGAAAGTCTATGCTGTGGATTTCAAATTATATTTTCTTAACTATTGTCTACGCAGTTAGTAGTAAAGCCTAGACGAACTTGTATTTATGCTGAAGTGTGAGCAACTGTATGCAAGTGTGGTAAGTCATTATAATAAACTTGGAAAGCTTTCCATGTACCCTGGTTCTGGAACTTCTAACTCAAGGCTAATGCTTCTACCATTTTTAAAACTGATAATTGCATTCAAGTGTGGTCTCCCCGATGCTGACTTTAATGTTATTTGGGGATGGTTCAGGTGGACT

Fln Alignment:

sp_v1.1_unigene16978___MAQESIQLVRPNGVCVQEKAGHANMITVLKKSCVYPAQPSDQKYCDLTTFDLPYVTFHYNQKILLYPSPSQGFASMVESLKKGLSEALVHFYPLAGRLCLDEEGILKVDCNDAGVDFIEASSDAVXXXXXXXXXXXXXMLGFIPYVDTLNSDGFFLPMVGVQVTKLIDGIVIGIAINHLIVDGYSTWHFMSSWAELCRGSSVISLPPSHDRALARNTKVKLNINLPTQESYANGTKSANGTKTAEHHLRSKIFHFSKKMIEEIKTKANKNKEGKPFSCFQALGAHLWHGVTRARKLAPEDITVFTLFIDCRARVDPPLPRNYFGNAIQGIYGVTAVGLLLSNDQTFAANLLQQVIDSHGAKAIRKKNEEWEQNPKLYGFSDAGINCVAVGSSPRFEVYENDFGWGKPVRVRSGCNNKFDGMVYLYPGQEGGGSVDVEIALLPQTMEMLETDTEFLLT
A9NVH7_______________MAQECIQQARSNGVCVQEKASHANVITKLRKSCVYPAQPSDQKYCDLITFDLPYVTFHYNQKIMLYPSPSQGFASVVESLQKGLSEALVHFYPLAGRLCMDEDGILKVDCNGAGVDFIEASSDVGLADLTDCDSSSDVMQGLVPYADTLNLDGFFLPMVGVQVTKLSDGVVIGIAINHLIVDGYSTWHFMSSWAELCRGSSVICLPPSHDRAVARNTKVKLNIDPPTRDSYVNGTKTEKRPP-----LRSKIFHFSKKMMDEIKAAANKNREGKPFSCFQALGAHLWQGVTRARKLAPEDITVFTLFIDCRTRIDPPLPRSYFGNAIQGIYGFTAVGLLLSNGPSFAANMLQQVIDSHGAKAIKQKNEEWEKNPKLYGFSDAGMNCVTVGSSPRFEVYENDFGWGRPVRVRSGCNNKFDGMVYLYPGQEGGGSVDVEIALLPETMDILESDPEFLLT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
693		80		20	0.995493
694			20	80	0.995493
695		80	20		0.995493
696			20	80	0.995493
894	90		10		0.90298
1344	14		85		0.993533
1381	10			90	0.90298
1383		90	10		0.90298
1384	90		10		0.90298
1798		62		37	1.0
1824	72		27		1.0
1855		30		70	1.0
1869		70		30	1.0
1994		52		47	1.0
1998		17		82	1.0
2018		20		80	0.999996
2057	66		33		0.997452
2110			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain