SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16975

Length: 838 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16975

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	41%
Blast2go	hypothetical protein SELMODRAFT_410981 [Selaginella moellendorffii]	-	-	2.8026e-45	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D8RHM2

Fln msg: Overlapping hits, possible frame ERROR between 564 and 563, Distance to subject end: 335 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 220 - 589

Fln protein: MVGISVALAVEHLPTASVPSTISLAAKNRFILIPNLDSRSTVKANVKQFLEEFLYIPSHLQSLSAPLFTKLGENESVEDLYRRYDCHAEAQDPGIHVDEDTYTFWGREAGKSVDLQDELALEDYHILxxKTKICLKTLPEHLPKQGGRIFAETKDGILPLVGISPLTRISEIKRKLEVMTGIPAAHQLLSSVGRVMHDDFHIKDFKGFHAIYEGSIIDLC

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTCGTGCTGCCGCTCCTCTGGCGGTTTTCCTTCTGTATGCCTCGCAGAATTGTCGTTCAATTCGCGTCAAAGCAGTCGCCTGCGTTTCCCCCATCGCTTTCTGTTTAGTAGCCATGGTTTTATGAAGCAAGTTTGAACTGAATCCGAGCGTC_-_ATGGTAGGAATATCTGTGGCATTGGCCGTGGAGCATCTGCCCACCGCAAGCGTCCCGTCAACAATTTCTCTGGCAGCAAAGAACCGATTCATCTTGATTCCCAATCTCGATTCCCGGTCAACAGTGAAGGCCAATGTCAAGCAATTTCTGGAAGAATTTCTCTACATTCCTTCCCATTTGCAGTCCCTCTCGGCTCCCCTGTTCACCAAGCTAGGTGAAAACGAGTCTGTGGAGGATCTGTATCGTAGATATGACTGTCATGCCGAGGCGCAGGATCCTGGTATCCATGTAGACGAAGATACCTATACATTTTGGGGCAGAGAGGCTGGCAAGAGCGTTGATTTACAGGATGAACTTGCGCTGGAAGATTATCATATACTAxxxxxxAAAACCAAGATATGTCTCAAGACACTCCCAGAACACTTGCCCAAACAAGGTGGCCGTATATTTGCAGAGACCAAAGATGGGATTCTTCCTTTGGTAGGGATTAGTCCTTTAACAAGGATCTCCGAGATAAAACGAAAACTAGAGGTTATGACAGGGATTCCTGCAGCCCACCAGCTGTTGTCTTCTGTTGGTCGAGTTATGCATGATGACTTCCATATCAAGGACTTCAAAGGTTTTCATGCAATTTATGAGGGCAGTATTATTGATCTCTGT

Fln Alignment:

sp_v1.1_unigene16975___VGISVALAVEHLPTASV-PSTIS-LAAKNRFILIPNLDSRSTVKANVKQFLEEFLYIPSHLQSLSAPLFTKLGENESVEDLYRRYDCHAEAQDPGIHVDEDTYTFWGREAGKSVDLQDELALEDYHILxKTKICLKTLPEHLPKQGGRIFAETKDGILPLVGISPLTRISEIKRKLEVMTGIPAAHQLLSSVGRVMHDDFHIKDFKGFHAIYEGSIIDL
D8RHM2_______________MAITVGIRVEHLAVANVYPGAVAPLGDRSKLILAPNLLYNGSVRSTLKEFVRDNLFFGEEQQQLVAPLFTRLSESMPVEEVYKRYACQADRDECELFVDEESLTFFGREAGKTVDLPDDAKLHEYNILxKSIVELRKAPQLLSGRGGRLFVETKDGILPLQGICGDTRVSALKDAIEKHTGILKSRQLLSSIGCVMHDEFCIKDFDGVHAIYEDSIVDL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
51		16	83		0.994512
52	44	44	11		1.0
53		11	88		0.923564
54	11		55	33	1.0
171	95	4			0.997494
435		20	80		0.999996
436	80		20		0.999996
438	20			80	0.999996
441		80	20		0.999996
446	20	80			0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain