SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16973

Length: 1449 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	ests gb	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTB0

Fln msg:

Fln protein: MGSSKVLLLIVSIFIAIISNSFAFRSDELQDDEEWGLVGGRSPESDFVRHTKFSRSSTAGHSDVLSTSSDSKLNISLDHAFGYSDFSPAGYFTARLKPSPQGGQTLTKLRLTRSSLTESEQKAFQELLREDDFYRIRLPTNVLTPGKDYVHSSVKARCLASDDLEENIIIHTEGVNVIAITYGSTGECPYPREQKLPKRWSFNSKTLLKSSEQSSRLPPMAEDILGIERTIEQDETIKPPERSFWAKYWMYLVPLGLIVMNAVTQAMNMPEEQAAGQAPQRISNSGARRR*

Protein Length: 292

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTACTTTGGGTCACTTTTCATGAAGCCTCACGTGACTCGACTCCCAAGACGAACAGCATAAAACCGTTCGAAAGGACCGAAACAGTAACTTTAGTTCTAAAGTCTCCTGGTTTAATTCTTGTGAAGCTAGAGACGCAGAGGAA_-_ATGGGTTCGTCCAAGGTGCTCCTGCTCATCGTTTCGATATTCATTGCAATCATTTCCAATTCATTTGCTTTCCGCTCGGACGAGCTCCAAGATGACGAAGAATGGGGACTGGTGGGCGGCAGATCGCCGGAATCAGACTTCGTTCGTCACACAAAATTCTCCAGAAGTAGCACGGCAGGCCACTCTGATGTCCTCTCTACTTCTTCCGACTCCAAGCTTAACATTTCCCTGGATCATGCGTTCGGTTACTCAGATTTCTCCCCTGCTGGATATTTTACGGCGCGGTTGAAGCCATCTCCTCAGGGCGGTCAGACCCTAACCAAGCTTCGGCTCACGAGAAGTTCTCTAACTGAAAGTGAGCAGAAAGCATTTCAAGAACTGCTGAGGGAGGATGATTTTTACAGGATAAGGTTGCCGACCAATGTTTTAACTCCTGGAAAGGATTATGTTCATTCATCTGTAAAAGCTAGATGTTTAGCGAGTGATGATTTAGAAGAGAACATCATCATTCACACGGAAGGGGTGAATGTCATAGCTATTACATATGGGTCAACTGGTGAATGCCCATATCCTCGAGAGCAAAAACTTCCAAAACGATGGTCCTTCAATTCAAAGACACTATTGAAAAGCAGTGAACAGTCTTCAAGGCTGCCTCCGATGGCTGAAGATATTCTAGGAATTGAAAGGACAATTGAACAGGATGAAACCATCAAACCCCCAGAGAGGTCATTCTGGGCCAAATATTGGATGTACCTTGTTCCATTGGGTTTGATTGTTATGAATGCCGTAACCCAGGCAATGAATATGCCAGAGGAGCAGGCTGCAGGACAAGCACCACAGCGGATATCGAATTCGGGAGCTCGTAGGAGGTGA___TTGAATGGTTGGAAACTTAATCCATGAGAGTAGTCCTACTAATTCAGGATTCTGTTCAAGCTTAAGATTGCTTTTAGTTGAAAGTATTAAGAGCATGTACTTTTTTCAGGCTGAAGCCAAATCTAAAGTGACAAAATGACCGAGGGTTGAAATAACTAATTCCATTACAGTCGTCTTGTATTTTTTACATTTCCAGAACCAGCTTGCATTCATATCAAGTTGCCCATCCACAAGAATCACAAAACATAGTACTGAATTTGAACCATGTTCTAGCAATGTATCATACCATTCTTTAGAGCACTGTTAGGACAATAATTGTTTGACTTGATCATTTTTCAGTATAAGGCACGATCCATATAGTGCCAACTTACAAGATAGTGAACTTTAAAACTATCATGAAATTGACC

Fln Alignment:

sp_v1.1_unigene16973___MGSSKXXXXXXXXXXXXXXXXXXXRSDELQDDEEWGLVGGRSPESDFVRHTKFSRSSTAGHSDVLSTSSDSKLNISLDHAFGYSDFSPAGYFTARLKPSPQGGQXXXXXXXXXXXXXESEQKAFQELLREDDFYRIRLPTNVLTPGKDYVHSSVKARCLASDDLEENIIIHTEGVNVIAITYGSTGECPYPREQKLPKRWSFNSKTLLKSSEQSSRLPPMAEDILGIERTIEQDETIKPPERSFWAKYWMYLVPLGLIVMNAVTQAMNMPEEQAAG---------QAPQRISNSGARRR
C0PTB0_______________MGSSKELLLIVSIFLAIISNSSAFRSDELQDDEEWGLVGGRSAESDIARPPKFPRSSTAGHSDVFSTASDSKLNISLEHAFGYSDFSPAGYLTARLKPSPHGGQTLTKLRLTRNSLTESEQKVFKELLREDDFYRIRVPTNVLTPGKDYVHSSVKARCLARDDLEERFIIHMEGVNVIAITYGSTGECPYPRLLKLPKRWSFSSQTVLKSSEQSSRMPTMTEDILGVENAVEQDEAIKPPERSFWAKYWMYLVPLGLIVMNAVTQAMNMPEEQAAGQASPGQTSMQAPQRISNSGARRR

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
488	90			9	0.999872
489	90			9	0.999872
497			10	90	0.999898
498	10	90			0.999898
500			90	10	0.999898
501		90	10		0.999898
502	10			90	0.999898
505		90	10		0.999898
507	90	10			0.999898
508		10	89		0.999919
567		12		87	0.992554
925		3		96	0.986325
1137	10	90			1.0
1179	85		14		0.999981
1253		12		87	0.992554
1258	14			85	0.993533
1259		85		14	0.993533
1261	85	14			0.993533
1275	70			29	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain