SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16963

Length: 2351 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16963
CGTCGTGACCTTGGCTGTCACTCAATTTTTTGGTCTCTTCGTCTTCTTTCCTTGTAACTTCTCGCTTCTCCGAGTTCACCTTTTATTTTAACTGGCTCTGCGTTTCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAAATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAGGTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGAAGTTTTGCCTCCTTAATTGCTAAAAGCCTAACACTGAATGTAATATATAGGTGAATGAAATCTTTCAAAATAAATCCGAAAAAGTTTGAAATGG

Ace file of the UniGene sp_v1.1_unigene16963

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid hexose transporter n=1 Tax=Vitis vinifera RepID=Q539E7_VITVI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	sugar transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	86%
Blast2go	carbohydrate transport	GO:0008643	Biological Process	86%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	86%
Blast2go	General substrate transporter	IPR005828	-	86%
Blast2go	Sugar transporter, conserved site	IPR005829	-	86%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	86%
Blast2go	Major facilitator superfamily domain	IPR020846	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMN4

Fln msg:

Fln protein: MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQTASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMIIGRLLAGIGIGISSSLVPLYISEISPTEIRGALGSVNQLFICVGILLALVAGLPLAGNPLWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITSFSGMAASMLLLSLSLSWNALARYSGILAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT*

Protein Length: 550

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGGTCTCTTCGTCTTCTTTCCTTGTAACTTCTCGCTTCTCCGAGTTCACCTTTTATTTTAACTGGCTCTGCGTTTCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAA_-_ATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAG___GTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGAAGTTTTGCCTCCTTAATTGCTAAAAGCCTAACACTGAATGTAATATATAGGTGAATGAAATCTTTCAAAATAAATCCGAAAAAGTTTGAAATGG

Fln Alignment:

sp_v1.1_unigene16963___MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQ-TASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMXXXXXXXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICXXXXXXXXXXXXXXXXXXWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITXXXXXXXXXXXXXXXXXXXXXXRYSGILAVLGTVLYVVSFSXXXXXXXXXXXXEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT
B8LMN4_______________MQAIAGSKIFSPLEGRNRVQGWRTFCSGSLTRPLNLSVTEGPSAKILKGAVSLNSSVWGSRQICMEKRMNLGLTNKRGGSSKIRAKAYDGNLESQSTASGKSSSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLAKDLGFADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRTFQLDAIPLVIGPFLSATAQSVQAMIIGRLLAGIGIGISSALVPLYISEISPTDIRGALGSVNQLFICVGILLALVAGLPLAANPLWWRSMFTIATVPAVLMALGMLFSPESPRWLFKQGRIVEAESAIKTLWGKGKVEEVMLELRGSSTGSVEEDAGWFDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIASDVAASALVSASNVIGTAVASSLMDKQGRKSLLITSFTGMAVSMLLLSLSLSWKALAQYSGTLAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFVIGLYFLSVVNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAGT

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
107	13	86			1.0
315	48		51		1.0
903		20	80		0.995493
904		11	88		0.923564
905			11	88	0.923564
907		11		66	0.999999
912	77	22			0.999999
913		88		11	0.923564
914		77		22	0.999999
915	77			22	0.999999
916	77		22		0.999999
917		77	22		0.999999
918		22		77	0.999999
920			22	77	0.999999
924		11		88	0.923564
925		11		88	0.923564
926	11	11		77	0.968132
927	11		88		0.923564
1064		80		20	0.995493
1416		20	80		0.995493
1527	12			87	0.992554
1529		87	12		0.992554
1530			12	87	0.992554
1531		87	12		0.992554
1716			95	4	0.994598
1947		2		97	0.962263
2117	95	4			0.996252
2163	71		28		1.0
2188		11		88	0.999937
2225	11			88	0.923564
2226	12			87	0.992554
2227	83		16		0.994512
2231		25		75	0.996473
2233		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
170	181	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain