SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16962

Length: 1156 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16962

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L28, chloroplast (CL28)	-	-	1.0e-31	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	50s ribosomal protein chloroplast	-	-	0.0	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	82%
Blast2go	ribosome	GO:0005840	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L28	IPR001383	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
89	20		80		0.995493
90		80		20	0.995493
91	60		20	20	0.99255
93			20	80	0.995493
95	20		20	60	0.99255
96		20	80		0.995493
99	20			80	0.995493
471	11			88	0.923564
528			16	83	0.994512
529			83	16	0.994512
745	33			66	0.997452
790	28		71		1.0
799		14	85		0.993533
1107	25			75	0.996473
1111	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain