SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16960

Length: 1938 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	69%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	75%
Blast2go	inorganic phosphate	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	phosphate ion transport	GO:0006817	Biological Process	84%
Blast2go	transmembrane transport	GO:0055085	Biological Process	84%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphate permease	IPR004738	-	84%
Blast2go	General substrate transporter	IPR005828	-	84%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	84%
Blast2go	Major facilitator superfamily domain	IPR020846	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg:

Fln protein: MAKTQQLEVLNALDKAKTQWYHFTAIIISGMGFFTDAYDLFCITTVTKLLGRLYYYDPATGKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGMTLITMVGGALASGLSFGHTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGAVSIIVAASFNKAYPRPTFEENPGLSTAPQADFVWRIILMFGAIPALLTYYWRLKMPETARYTALVAKNTKLAASDMAKVLQVDIEEQAPETAKAAGNDQFGLFSREFARRHGLHLLGTTTTWFLLDIAYYSNNLFQKDIYTAVGWLPKAKKMNAIHEVYKVARAQSLIALCATVPGYWFTVALIDRIGRFAIQLMGFFFMTVFMFALAIPYYHWRGHTCDSGYCGGQHTTFVIMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHKKETDTGYPTGIGIKKALLLLAIICAMGFFFTFLTPETKGRSLEEITGENDDGQDEGQELHSGRFSNNRTTPA*

Protein Length: 550

Fln nts: ATGGGGAACTGCTCTATGCAGCTTTCGAGATCAGAAAGCAAGCGAGCAGGTTTTAATTAGGGATCGGTTGTGTGTGAATGTGATTTAGGGTTGGGGATTCCAAATTTTGAAGCTCAATC_-_ATGGCGAAGACACAGCAACTAGAAGTGTTAAACGCACTGGACAAGGCCAAAACGCAATGGTATCATTTCACAGCCATCATAATTTCTGGCATGGGTTTCTTCACTGATGCTTATGATCTTTTCTGTATTACTACTGTCACCAAGCTGCTGGGGAGACTTTATTACTACGATCCAGCGACTGGCAAACCCGGATCGCTGCCGCCCAATGTATCGGCGGCAGTGAACGGCGTGGCTCTGTGCGGAACACTGGCAGGCCAGCTGTTCTTCGGCTGGCTCGGCGACAAACTCGGGCGCAAGAAAGTGTACGGCATGACGCTTATCACCATGGTAGGCGGCGCCCTGGCCAGCGGGCTCTCGTTCGGCCATACGGCCAAATCAGTGATGACAACGCTCTGCTTTTTCAGGTTCTGGCTGGGCTTCGGCATCGGCGGGGACTATCCGTTGTCAGCCACGATAATGTCAGAATACGCCAACAAGAAAACACGCGGGGCCTTCATTGCCGCGGTGTTCGCTATGCAGGGCTTCGGCATCTTGACCGGAGGCGCGGTGTCCATCATCGTGGCCGCGTCGTTCAACAAGGCGTACCCTCGGCCCACGTTTGAAGAAAACCCGGGGCTGTCTACTGCCCCGCAGGCGGACTTCGTGTGGAGAATAATCCTCATGTTCGGAGCCATCCCAGCGTTGCTCACTTATTACTGGCGTCTCAAGATGCCGGAGACGGCTCGATACACGGCGCTCGTGGCCAAGAACACGAAGCTCGCCGCTTCCGACATGGCCAAGGTGTTGCAGGTCGACATCGAGGAACAGGCGCCGGAAACGGCAAAGGCTGCCGGAAATGACCAATTCGGGCTGTTTTCCAGAGAATTCGCAAGGCGCCACGGGCTTCATCTTCTGGGGACGACGACCACATGGTTTCTTCTGGACATAGCCTACTACAGCAACAACCTTTTCCAGAAAGACATCTACACGGCCGTCGGATGGCTTCCCAAAGCCAAGAAAATGAACGCCATACACGAAGTCTACAAGGTAGCCAGAGCCCAGTCGCTCATTGCTCTCTGCGCAACGGTGCCCGGCTACTGGTTCACCGTGGCTCTCATAGACCGCATAGGAAGGTTCGCCATTCAGCTCATGGGGTTCTTCTTCATGACGGTTTTCATGTTCGCTCTTGCAATTCCATACTACCATTGGCGAGGGCACACCTGCGACAGTGGCTACTGCGGCGGACAACACACGACCTTCGTGATCATGTACTCGCTTACATTTTTCTTCGCCAATTTCGGGCCAAACAGTACCACTTTCATAGTGCCCGCCGAAATCTTTCCGGCCAGATTGCGCTCGACTTGCCACGGCATCTCGGCTGCAGCTGGGAAGGCGGGGGCCATCGTGGGAGCGTTTGGGTTCCTGTACGCTGCGCAGAGCACGCATAAAAAGGAGACAGATACAGGTTACCCCACGGGAATAGGAATCAAGAAAGCTCTGCTGCTTCTTGCTATTATCTGCGCCATGGGTTTTTTCTTCACGTTTCTAACTCCGGAGACGAAGGGCAGATCCCTTGAGGAGATCACGGGTGAAAATGATGATGGGCAGGACGAGGGACAAGAGCTTCATTCCGGTCGCTTTAGCAATAATAGAACCACGCCTGCTTAG___AAAGATCGTGGGTACTGTCTTAGGTTTCACTCTTTTGTAATTTGCAGTAAGGGTTTCATTATATTGCTGCAATATCAGAGCTTCTATGTAAGGGGCTCTGCACTAAGAGATCCATCACAATTGTCTTCGATATTTTCGTATAATTCCAACTCTGCATCTAAACAGTGGAAAT

Fln Alignment:

sp_v1.1_unigene16960___MAKTQQLEVLNALDKAKTQWYHFTAIIISGMGFFTDAYDLFCITTVTKLLGRLYYYDPATGKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGMTLITMVGGALASGLSFGHTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGAVSIIVAASFNKAYPRPTFEENPGLSTAPQADFVWRIILMFGAIPALLTYYWRLKMPETARYTALVAKNTKLAASDMAKVLQVDIEEQAPETAKAAGND-QFGLFSREFARRXXXXXXXXXXXWFLLDIAYYSNNLFQKDIYTAVGWLPKAKKMNAIHEVYKVARAQSLIALCATVPGYWFTVALIDRIGRFAIQLMGFFFMTVFMFALAIPYYHWRGHTCDSGYCGGQHTTFVIMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQSTHKKETDTGYPTXXXXXXXXXXXXXXCAMGFFFTFLTPETKGRSLEEITGENDDGQDEGQELHSGRFSNNRTTPA
Q1XG57_______________MAKTQ-LEVLNALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISTVTKLLGRIYYFEDGK-KPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICSIASGLSFGHTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGGAVSIIVSAGFKSHFKAPAYQDDPKGSTVDEADFVWRLILMFGAVPAAMTYYWRMKMPETARYTALVERNAKQAAADMSRVMQVDIEEDRQKIDEIATREPSFGLFSAQFAKRHGLHLLGTTSTWLLLDVAYYSQNLFQKDIFTAIGWIPAGKKMNAIEEVYRIAKAQTLIALCSTVPGYWFTVFFIDRIGRFTIQLMGFFFMTVFMFALAIPYNHWRGTKCGDDYCDGNHIAFVVLYSFTFFFANFGPNATTFIVPAEVFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHQSEVDHGYHKGIGVKNSLILLGVTNAMGFLFTFLVPETNGKSLEELSGENE--EDEGTELPPS-VSTTRTAPA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1672		61		38	1.0
1704	41		58		1.0
1728	75		25		1.0
1777		33		66	1.0
1820	66		33		1.0
1827		16		83	0.994512
1835		83		16	0.994512
1850		20		80	0.995493
1855		60		40	1.0
1856		60	40		1.0
1860	80			20	0.995493
1863	20		80		0.995493
1876	20		80		0.995493
1878			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain