SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16959

Length: 1631 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16959

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WHY1; WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	atwhy1 ptac1	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	68%
Blast2go	negative regulation of telomere maintenance via telomerase	GO:0032211	Biological Process	68%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	68%
Blast2go	telomeric DNA binding	GO:0042162	Molecular Function	68%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ssDNA-binding transcriptional regulator	IPR009044	-	0.0	68%
Blast2go	Plant transcription factor	IPR013742	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLD1

Fln msg:

Fln protein: MLKLKGLGNQILRTAAARRLQPLCTPFSSSHWYSKVVKVGSNDELSETPSSSSSLGHYAPSQPDFLRRQTNKIYVRHTVFKDEGALGMQPKLPDYITLNTGGVILAKEGCMFLEFTPAVGPRQYDWSKKKVIALSVVEVGQLSSLGSDESCEFKHDSFLGKSEAGKVWKVLKVGNLQDAEGYTFEFSVTDNIANADLSLSIPITKGEFSVMRSSFNFILPYLMGWHAYTDSTKFNESGYFMSGSPIIAKRPDLEWGR*

Protein Length: 259

Fln nts: ATGGGGGACCAAATTCAAGTATTTAATATATTTTAGGGTTAAGGACATGCTCCAATTAATGGGCTTTTTTGAAAATCTGGGTGGCCAGCATCAACGTGCCCGGTGATGTCATTTCATTTTATTTTGTTTCACATCAAATAAGTACACTAATAAGTATCATCTCACACCTTTGATTTGGCGCCCAAGCACAGTTAAAAACCTCACGCGCTGTGACCATCTCCGACAGAAGAAGAAGAAA_-_ATGCTGAAGCTCAAAGGTTTGGGTAATCAAATTCTGCGCACCGCTGCTGCCAGGCGCTTACAACCTCTTTGCACGCCCTTCAGTTCCAGCCACTGGTATTCCAAGGTTGTGAAAGTTGGTTCTAATGATGAATTGTCTGAGACCCCAAGCTCATCTTCGAGTCTGGGCCATTATGCTCCAAGTCAGCCCGATTTTTTGCGACGTCAAACCAACAAGATATATGTAAGGCATACAGTCTTCAAAGATGAAGGGGCACTTGGGATGCAACCCAAATTACCTGATTATATCACATTGAATACGGGAGGAGTCATACTAGCAAAGGAAGGTTGCATGTTCCTTGAGTTTACTCCTGCTGTTGGTCCTCGCCAGTATGATTGGAGTAAGAAGAAGGTAATTGCTTTATCTGTTGTTGAAGTTGGACAACTGTCAAGTTTAGGTTCCGATGAGTCATGTGAATTCAAACATGATTCGTTTCTGGGAAAAAGTGAAGCAGGAAAAGTATGGAAAGTTTTGAAGGTTGGTAATTTGCAAGACGCGGAAGGATACACTTTCGAATTTAGTGTTACTGACAACATTGCAAATGCAGATTTGAGTTTGTCTATTCCTATAACAAAAGGGGAATTTTCAGTCATGCGGTCTAGTTTCAATTTTATCTTGCCTTATCTCATGGGCTGGCATGCCTATACAGACTCCACAAAGTTCAATGAATCTGGCTATTTCATGTCTGGTAGCCCTATTATTGCCAAAAGACCTGATTTAGAGTGGGGTAGGTAA___TTTGGTTTTGAAGAAAAGATATGCAGACCTCAGGCGAAAGATTTTTAACTGTTTGGGATGCTTACCTGAATGTGCCATTTTAATAGCTATGACAAGTAATGTTCACTGGAGGGAAAAGGTGTTGATTTTGGAAGCAATTGATTTGCGAGATATATAATTTGGTGCAGAGAGATTCTCACTGAGGGTGACTCTAGAACTATATTCAAAGTTATAATGTTTCGTATCATATATGGCAAATGGATTAAATGCTTAGATTAGTAGTGTTAGAGGCATACTGAACATTGGTGTTACACCTTCAGTTTTATTTGGAACTACAGTAAAATGCCAGTTTCATGGAGATTTTGTTGATGGGAGATTTGATTTCAGTACCAAGGACAGCACGCATCAAGGTTTTTTCCCTCTTAATTTTGTAAACATTTTTGTTAGATATTTGGTGTTCTATATCGATGACGTCTTAAAAGAATGTTGTCTGGGTTTGGTCACAAATATGTTTGGTGGTCTATATTGGTGTAGTCTTAAAAGAGCATTGACTTGTATCATTTCTCTTATTTTGCTATCATTTGAATTTGAATTATTACTACTTTATAGAAATTTTCTGCTCGTTTAATTGCTGAAATAC

Fln Alignment:

sp_v1.1_unigene16959___QILRTAAARRLQPLCTPFSSSHWYSKVVKVGSNDELSETPXXXXXLGHYAPSQPDFLRRQTNKIYVRHTVFKDEGALGMQPKLPDYITLNTGGVILAKEGCMFLEFTPAVGPRQYDWSKKKVIALSVVEVGQLSSLGSDESCEFKHDSFLGKSEAGKVWKVLKVGNLQDAEGYTFEFSVTDNIANADLSLSIPITKGEFSVMRSSFNFILPYLMGWHAYTDSTKFNESGYFMSGSPIIAKRPDLEWGR
A9NLD1_______________RILGGSATRRFQPLCMPFSSSHWYSKVAKASSNDELSEVRGLSSSLDHYALTQPEFLRRQTNKIYVKHTVYKGEGALTMKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKIIALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQDTGGYFFNLSVTDRIADVDESFSIPITKGEFSVMQSIFNFILPYLMGWHAYMDSTKLNESGHFKSGGPSIAKRPDLEWGR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1198	5		94		0.998578
1210		44		55	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
225	237	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain