SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16951

Length: 3018 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16951
CGTCGTGACCTTGGCTGTCACTCATCATCTTCGTCGTGACCTTGGCTGTCACTCAATTCGCAAACTGTGCCCTTTACTAATCGATGTACAATTTTTGACATCCGCAATTTAAAAGATTTTCAGATCCGCTTTAAGGCCGCAAAGAGTGACGATAACTCAGGAAAGAAGCACAGAATCACTAGGCCGACCGGGACGTTCATTTTGTAGGTTGTTGGTGAACTGACGGAACTCCGATCCTATCCTAAAAAACACACCTCAGAATGGCTGAACCAGACTCGTGGGAGGAGATGGATTCTCAACCTTCGCATTCTGCAGCTGCCGCATCATCGATGAACTCAAAATTGAACGCAAATGCCCCGTCGTTTACATTTAATGTCAAAGCCCCTGCTTTTTCACCGGTTCCGAACGCGTATTTTCCCGCACAACCTAGTACACAACAGGCCTTTTTTCCGACCAATCCTGTGAACTCCACCAATCCTCAATTTGTAAACCCTACAAGCCCCATACAACCTATCAGCCCTACAAACCCCTCTGCAGGGTTGCCCCCACAGAACGCACCGGGGGCCGTTTCACCATACGTCCAACCCTCATATCCTCCTGCGGTCGACCATCAAGTGGCGGCTAGAAATGACGTTGCCTCTAAAATTGAAACCCTGCAGCATTCTGAGCGGGAGCGGTATGAAACGAGGCCGGACTTAACCGATAAGGATGTTGAGATGGAAGTGGATGGTGGATCTGCCCAAGTCGAAGCAAAAGAAACGGCTGCCGCCAACGGCGAGAGTAACGGTGCGTTGAGAGGGGACGAGGAGCAGGTAGTATCTAATTTGAACTCATTGAAATTAAAGGACACAGAACAGAATAAAGAAGTTGACATTAAGCATGAAGAAATGGCTCAAGAACATTTTGAGGATTCCCAACAATTGGAAGAGGAAGAGGAGATTGAAGAGAAGCCACACATGAATGTTGTCTTTATTGGTCATGTTGATGCTGGTAAATCAACAACTGGTGGGCAAATATTATATCTATCTAAAATGGTGGATGAGCGTACAATTCAAAAATATGAAAAAGAAGCAAAGGAAAAGAACCGAGAAAGTTGGTATATGGCATATATCATGGACACAAATGAGGAAGAACGAGTAAAGGGAAAGACAGTGGAGGTTGGTAGAGCTCATTTTGAAACTGAGAAGACAAGATTTACAATCTTGGATGCTCCAGGGCACAAAAGCTACGTTCCAAACATGATTAGTGGTGCATCACAGGCTGATGTAGGAGTTTTGGTGATATCGGCTCGAAAGGGTGAGTTTGAGACTGGATTCGAAAGAGGTGGTCAGACAAGAGAGCATGCTATGTTGGCAAAAACATTAGGAATTTCTAAACTATTTGTGGTGGTCAATAAAATGGATGATCCTTCAGTTGAGTGGGCCAAGGAGAGGTTTGATGAAATTGAAAAGAAGATAAGCCCCTTCTTGAAGTCTTGTGGCTACAATGTAAAGAAAGATGTGCTGTTTCTTCCAATATCAGCACTTCATGGTACTAACATCAAAGAGAAGATCCCAAAAAATGTGTGTGGTTGGTGGAATGGTCCAACCCTTTTTGAAGGGTTGGATTCAATCGAATTACCTCCAAGAGATCCTAAAGGTCCTTTCAGGATGCCATTAATAGATAAATTCAAGGATATGGGAACTGTGGTTATGGGAAAAATAGAGTCAGGCACTGTAAGGCAAGGAGACAGCTTAATTATAATGCCAAATAAGGTTCAAGTGAAAGTTGTAGCTGTTTATCGTGAAAGTGATGAAATAAAGTATGCAAGGCCTGGAGAAAATGTTAGGGTGAAATTATCTGGTGTTGAAGAAGATGACATCTCTACAGGCTTTGTTTTGTCTTCCATTTCAAATCCAATTCAAGCAGTGCTGGAGTTTGAGGCTCAGTTACAGATATTAGAACTACTGGAACATAAAGCAATATTTACTGCTGGTTATAAAGCTGTACTGCATATTCATTCTGTTGTCGAGGAATGTGAGATAATGGAGCTGTTAGAGCAGATGGATCCAAGGACGAAAAAGCCAATGAAAAAGAAATGTCTTTTTGTTAAGACTGGAGCAGTTGTGTTGTGTCGCATTCAGGTAAATGACACTATCTGTGTTGAGAAGTTCTCTGATTTTCCTCAACTTGGAAGGTTCACACTTCGGGATGAAGGTAAAACAGTCGCAATTGGAAAAGTTGTGAAGCTCCTAACTGCCACAGGACATGAATAACCGACGGAAATTGACTGAGACTATCCCTCGGCAATTATTCGATATGCACTAATAGAATGAGTGGGGCCTCGAGGGATTCTTTAATTCATCTTTCTGCACAGATTATGTGAGGCAACCCTTGAAATCGTTTCAATTTTCAGGTGCAAGGTGAACATGATGTCAGTAATCTTTATTTCTTGAACTGTCTTCAAGTGAAGAATGATGCAAGGGATGGATAAAGCGTTCATTGTGGTAGCAGTGAAGGTTTAGATATATATAGAATGATTGCTATTTTTGCAAGCCTCTATTCTGCCATGTCATGGGGGGCATTTAAACAAGAATACACAGATTTAACAGATTTAAGTGAACCTCAATTATAGGTCTGTTTGTATCTGGTCTATATTTTGTTCAATTTTATGTGGACGTAAGAGTTGTAATATTTTCAGCAATTTCATGTGCTCTAATGGCTTGAACATTGTTTGTTCAGCTTATATAAAGACACTGAATTTTCAACGATTTTACCGTTCTAATAGCTTGAGCATTATCTGTTCAGCTAATATTAAGGCACTGAATTATTTGTTTATCAGCGTTCTATGGTCAAGCCATTTCTCGTGATCTTGTGGCTTGGGCATTATATGTTCAGCTGACATTAGAGAGTTAATGGCTTTTAATCACCATTCATTTATTTCATGTTCTTGTTTTGAATATTTGGAACTATGATTTGCCCTGGTTGCTCAATGTATATAAAACTTCTGGGGTAAACCCAAAAATTCTGTTGCCATGA

Ace file of the UniGene sp_v1.1_unigene16951

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic peptide chain release factor GTP-binding subunit, putative (EC:2.7.7.4)	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	eukaryotic peptide chain release factor gtp-binding	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfate adenylyltransferase.	EC:2.7.7.4	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		84%
Blast2go	Selenocompound metabolism	00450		84%
Blast2go	Sulfur metabolism	00920		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	84%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	84%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	84%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	84%

Source	GOs	Term	Type	Identity
Blast2go	translational termination	GO:0006415	Biological Process	84%
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	sulfate adenylyltransferase (ATP) activity	GO:0004781	Molecular Function	84%
Blast2go	translation release factor activity	GO:0003747	Molecular Function	84%
Blast2go	GTPase activity	GO:0003924	Molecular Function	84%
Blast2go	vacuole	GO:0005773	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNF8

Fln msg: your sequence is longer than subject: 665 - 466

Fln protein: MAEPDSWEEMDSQPSHSAAAASSMNSKLNANAPSFTFNVKAPAFSPVPNAYFPAQPSTQQAFFPTNPVNSTNPQFVNPTSPIQPISPTNPSAGLPPQNAPGAVSPYVQPSYPPAVDHQVAARNDVASKIETLQHSERERYETRPDLTDKDVEMEVDGGSAQVEAKETAAANGESNGALRGDEEQVVSNLNSLKLKDTEQNKEVDIKHEEMAQEHFEDSQQLEEEEEIEEKPHMNVVFIGHVDAGKSTTGGQILYLSKMVDERTIQKYEKEAKEKNRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGFERGGQTREHAMLAKTLGISKLFVVVNKMDDPSVEWAKERFDEIEKKISPFLKSCGYNVKKDVLFLPISALHGTNIKEKIPKNVCGWWNGPTLFEGLDSIELPPRDPKGPFRMPLIDKFKDMGTVVMGKIESGTVRQGDSLIIMPNKVQVKVVAVYRESDEIKYARPGENVRVKLSGVEEDDISTGFVLSSISNPIQAVLEFEAQLQILELLEHKAIFTAGYKAVLHIHSVVEECEIMELLEQMDPRTKKPMKKKCLFVKTGAVVLCRIQVNDTICVEKFSDFPQLGRFTLRDEGKTVAIGKVVKLLTATGHE*

Protein Length: 666

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATCTTCGTCGTGACCTTGGCTGTCACTCAATTCGCAAACTGTGCCCTTTACTAATCGATGTACAATTTTTGACATCCGCAATTTAAAAGATTTTCAGATCCGCTTTAAGGCCGCAAAGAGTGACGATAACTCAGGAAAGAAGCACAGAATCACTAGGCCGACCGGGACGTTCATTTTGTAGGTTGTTGGTGAACTGACGGAACTCCGATCCTATCCTAAAAAACACACCTCAGA_-_ATGGCTGAACCAGACTCGTGGGAGGAGATGGATTCTCAACCTTCGCATTCTGCAGCTGCCGCATCATCGATGAACTCAAAATTGAACGCAAATGCCCCGTCGTTTACATTTAATGTCAAAGCCCCTGCTTTTTCACCGGTTCCGAACGCGTATTTTCCCGCACAACCTAGTACACAACAGGCCTTTTTTCCGACCAATCCTGTGAACTCCACCAATCCTCAATTTGTAAACCCTACAAGCCCCATACAACCTATCAGCCCTACAAACCCCTCTGCAGGGTTGCCCCCACAGAACGCACCGGGGGCCGTTTCACCATACGTCCAACCCTCATATCCTCCTGCGGTCGACCATCAAGTGGCGGCTAGAAATGACGTTGCCTCTAAAATTGAAACCCTGCAGCATTCTGAGCGGGAGCGGTATGAAACGAGGCCGGACTTAACCGATAAGGATGTTGAGATGGAAGTGGATGGTGGATCTGCCCAAGTCGAAGCAAAAGAAACGGCTGCCGCCAACGGCGAGAGTAACGGTGCGTTGAGAGGGGACGAGGAGCAGGTAGTATCTAATTTGAACTCATTGAAATTAAAGGACACAGAACAGAATAAAGAAGTTGACATTAAGCATGAAGAAATGGCTCAAGAACATTTTGAGGATTCCCAACAATTGGAAGAGGAAGAGGAGATTGAAGAGAAGCCACACATGAATGTTGTCTTTATTGGTCATGTTGATGCTGGTAAATCAACAACTGGTGGGCAAATATTATATCTATCTAAAATGGTGGATGAGCGTACAATTCAAAAATATGAAAAAGAAGCAAAGGAAAAGAACCGAGAAAGTTGGTATATGGCATATATCATGGACACAAATGAGGAAGAACGAGTAAAGGGAAAGACAGTGGAGGTTGGTAGAGCTCATTTTGAAACTGAGAAGACAAGATTTACAATCTTGGATGCTCCAGGGCACAAAAGCTACGTTCCAAACATGATTAGTGGTGCATCACAGGCTGATGTAGGAGTTTTGGTGATATCGGCTCGAAAGGGTGAGTTTGAGACTGGATTCGAAAGAGGTGGTCAGACAAGAGAGCATGCTATGTTGGCAAAAACATTAGGAATTTCTAAACTATTTGTGGTGGTCAATAAAATGGATGATCCTTCAGTTGAGTGGGCCAAGGAGAGGTTTGATGAAATTGAAAAGAAGATAAGCCCCTTCTTGAAGTCTTGTGGCTACAATGTAAAGAAAGATGTGCTGTTTCTTCCAATATCAGCACTTCATGGTACTAACATCAAAGAGAAGATCCCAAAAAATGTGTGTGGTTGGTGGAATGGTCCAACCCTTTTTGAAGGGTTGGATTCAATCGAATTACCTCCAAGAGATCCTAAAGGTCCTTTCAGGATGCCATTAATAGATAAATTCAAGGATATGGGAACTGTGGTTATGGGAAAAATAGAGTCAGGCACTGTAAGGCAAGGAGACAGCTTAATTATAATGCCAAATAAGGTTCAAGTGAAAGTTGTAGCTGTTTATCGTGAAAGTGATGAAATAAAGTATGCAAGGCCTGGAGAAAATGTTAGGGTGAAATTATCTGGTGTTGAAGAAGATGACATCTCTACAGGCTTTGTTTTGTCTTCCATTTCAAATCCAATTCAAGCAGTGCTGGAGTTTGAGGCTCAGTTACAGATATTAGAACTACTGGAACATAAAGCAATATTTACTGCTGGTTATAAAGCTGTACTGCATATTCATTCTGTTGTCGAGGAATGTGAGATAATGGAGCTGTTAGAGCAGATGGATCCAAGGACGAAAAAGCCAATGAAAAAGAAATGTCTTTTTGTTAAGACTGGAGCAGTTGTGTTGTGTCGCATTCAGGTAAATGACACTATCTGTGTTGAGAAGTTCTCTGATTTTCCTCAACTTGGAAGGTTCACACTTCGGGATGAAGGTAAAACAGTCGCAATTGGAAAAGTTGTGAAGCTCCTAACTGCCACAGGACATGAATAA___CCGACGGAAATTGACTGAGACTATCCCTCGGCAATTATTCGATATGCACTAATAGAATGAGTGGGGCCTCGAGGGATTCTTTAATTCATCTTTCTGCACAGATTATGTGAGGCAACCCTTGAAATCGTTTCAATTTTCAGGTGCAAGGTGAACATGATGTCAGTAATCTTTATTTCTTGAACTGTCTTCAAGTGAAGAATGATGCAAGGGATGGATAAAGCGTTCATTGTGGTAGCAGTGAAGGTTTAGATATATATAGAATGATTGCTATTTTTGCAAGCCTCTATTCTGCCATGTCATGGGGGGCATTTAAACAAGAATACACAGATTTAACAGATTTAAGTGAACCTCAATTATAGGTCTGTTTGTATCTGGTCTATATTTTGTTCAATTTTATGTGGACGTAAGAGTTGTAATATTTTCAGCAATTTCATGTGCTCTAATGGCTTGAACATTGTTTGTTCAGCTTATATAAAGACACTGAATTTTCAACGATTTTACCGTTCTAATAGCTTGAGCATTATCTGTTCAGCTAATATTAAGGCACTGAATTATTTGTTTATCAGCGTTCTATGGTCAAGCCATTTCTCGTGATCTTGTGGCTTGGGCATTATATGTTCAGCTGACATTAGAGAGTTAATGGCTTTTAATCACCATTCATTTATTTCATGTTCTTGTTTTGAATATTTGGAACTATGATTTGCCCTGGTTGCTCAATGTATATAAAACTTCTGGGGTAAACCCAAAAATTCTGTTGCCATGA

Fln Alignment:

sp_v1.1_unigene16951___EQNKEVDIKHEEMAQEHFEDSQQLXXXXXXXXKPHMNVVFIGHVDAGKSTTGGQILYLSKMVDERTIQKYEKEAKEKNRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGFERGGQTREHAMLAKTLGISKLFVVVNKMDDPSVEWAKERFDEIEKKISPFLKSCGYNVKKDVLFLPISALHGTNIKEKIPKNVCGWWNGPTLFEGLDSIELPPRDPKGPFRMPLIDKFKDMGTVVMGKIESGTVRQGDSLIIMPNKVQVKVVAVYRESDEIKYARPGENVRVKLSGVEEDDISTGFVLSSISNPIQAVLEFEAQLQILELLEHKAIFTAGYKAVLHIHSVVEECEIMELLEQMDPRTKKPMKKKCLFVKTGAVVLCRIQVNDTICVEKFSDFPQLGRFTLRDEGKTVAIGKVVKLLTATGHE
B8LNF8_______________EQDTEVDIKHEEMAQAHSEDSQQ--PEEEVEEKPHMNVVFIGHVDAGKSTTGGQILYLSKMVDERTIQKYEKEAKEKNRESWYMAYIMDTNEEERAKGKTVEVGRAHFETDKTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGFERGGQTREHAMLAKTLGICKLFVVVNKMDDPSVEWAKDRFDEIEKKISPFLKSCGYNLKKDVQFLPISALHGTNMKDRVPKNVCGWWNGPCLFEALDAIELPPRDPRGPFRMPLIDKFKDMGTVVMGKIESGTVRQGDSLFIMPNKVHVKVVAVYRESDELKYARPGENVRVKLSGVEEDDISTGFVLSSIAKPIHAVLEFDAQLQILELLEHKAIFTAGYKAVLHIHSVVEECEIMELLEQMDPRTKKPMKKKILFVKTGAVVLCRIQVNDTICVEKFSDFPQLGRFTLRDEGKTVAIGKVVKLPTITRNE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
177		33	66		1.0
178	33		66		1.0
179		33	66		1.0
180	33			66	1.0
218	66		33		0.997452
238			66	33	0.997452
250		66		33	0.997452
299	75		25		0.996473
312			25	75	0.996473
333	25	75			0.996473
334	75			25	0.996473
335		75	25		0.996473
2597	86	10	3		1.0
2601	93		6		0.999453
2606		93		6	0.999453
2607	93		6		0.999453
2608	93		6		0.999453
2609		6		93	0.999453
2611	93		6		0.999453
2615		6	93		0.999453
2652		4		95	0.996599
2659		4	95		0.996599
2789		4		95	0.996252
2854	7		92		0.999999
2899		93		6	0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain