SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16945

Length: 982 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16945 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	dna-directed rna polymerases and iii kda polypeptide	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Pyrimidine metabolism	00240	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	83%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	83%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	RNA polymerase, Rpb8	IPR005570	-	83%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	83%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	83%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
396	80		20		0.995493
556	90		9		0.999842
685		93	6		0.999453
688		6		93	0.999453
690			6	93	0.999453
691		6		93	0.999453
694	6	93			0.999453
695	93		6		0.999453
698	6			93	0.999453
699	93	6			0.999453
702	93	6			0.999453
746	12		88		1.0
749		25		75	1.0
755	21		78		1.0
947	90	10			0.90298
949	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain