SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16924

Length: 1354 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16924

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1421 multi-domain protein	-	-	7.0e-10	28%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	74%
Blast2go	protein	-	-	1.4013e-45	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	1.4013e-45	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7UC14

Fln msg: Separated hits, possible frame ERROR between 514 and 553,

Fln protein: MATGGIQGQLLDITIVGCLQLRDTEWISRQDPYVCLEYANSKFRTKTCTDGGKNPSFNEKFVLRLIEGLREINVSVWNSNTVTTDxxxxxxxxxxxxxxISSGYDDSTWPLQTKRGKYGGQVRLILHYANAGKSKVQSQLSAPPHTCQLPAIAPYAPPTGYTPYQQPSSFYPGYPPMSSYQTPQTTAYPPPPSNVYPPPPAYYPPPGPAYLPSPYGTTPSAYPPAGYPPPGPQGTYPAQPYPGYYPGP*

Protein Length: 250

Fln nts: ATGGGAGATCCATCGCACCTATTCACGACAGCTTTTGGACACTTCCAGTGAATGTATTTGTGTTTTCCTTGGCTTTGAATTGGGTTTGATTTTTTAAAGTAGGAAAGCTCTTTTAAGTGGGAAAACTAAGTCGGGTTTGATTTGGTTGGGGTTCCAGGGAATCAATCTCAATATTCTGTACCTAGTTGTGACTGCCGTTGCCTATTTAGGAGGATTCAAAGGGTCTGAAGCTTTTAGAATTCGTCACTTCAGTTTC_-_ATGGCCACAGGCGGAATTCAGGGTCAGCTCCTGGATATAACAATTGTGGGATGCCTCCAGCTGAGGGACACGGAGTGGATCTCCAGGCAAGACCCATATGTTTGCCTGGAATATGCTAACAGTAAATTCCGAACAAAAACTTGCACAGATGGTGGAAAGAATCCAAGTTTCAATGAGAAATTTGTTCTTCGTTTGATTGAAGGCCTTCGTGAAATAAATGTCTCTGTCTGGAATAGCAACACTGTAACAACTGATGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCTCAAGCGGGTATGATGATTCAACATGGCCACTGCAGACAAAAAGAGGAAAATATGGTGGGCAAGTGAGGCTCATCCTTCACTATGCAAATGCCGGGAAAAGTAAAGTGCAATCTCAGCTTTCAGCTCCTCCACATACATGCCAGTTACCAGCTATTGCTCCATATGCACCACCGACAGGATATACACCATATCAGCAGCCATCTTCTTTCTATCCTGGATATCCACCAATGTCGAGTTATCAAACACCACAAACTACTGCATATCCTCCGCCTCCAAGTAATGTGTATCCTCCGCCTCCGGCTTACTACCCTCCGCCAGGTCCTGCATACCTGCCTTCTCCATATGGAACTACTCCATCAGCATACCCTCCAGCTGGGTATCCTCCACCAGGACCACAAGGAACATATCCGGCACAGCCTTATCCAGGGTATTATCCAGGACCATAA___ACACCTTTGGTCCTTTTATAAATTGCTTGGGAGGTGCCTGGCTGGGGGTAAGGTGTTTATATCCATCCTTCATTTGCTTTTCATTTTAAGAAATTGGATTGTGATGGGAGTAGGTTATTCTAGGTTTTGTAGTTATAACTTATTACAGGAATTACATAAATAAGCACAATTATGTGCAGAGGTGGGGAGGCAAAAAGGGGTCATGGAATTAAGAGTATAGTTTGCTGCAGAGAAGATTCCATCAAATTTGTCTTGACTCTTCACAGAAATGACAGCGTCCATATTTTGTTTCTCCAACATCTGCAGGAGTGGATAAATTTTTCTTTCTTAGATTAAGAAGAATTTTCCCCAT

Fln Alignment:

sp_v1.1_unigene16924___MATGGIQGQLLDITIVGCLQLRDTEWISRQDPYVCLEYANSKFRTKTCTDGGKNPSFNEKFVLRLIEGLREINVSVWNSNTVTTDDxxxxxxxxxxxxxISSGYDDSTWPLQTKRGKYGGQVRLILHYANAGKSKVQSQLSAPPH
D7UC14_______________MSISGIQGQLLEVTVVGCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEKFVFTLIEGLREVNAVVWNSNTLTYDDxxxxxxxxxxxxxLSQGYDDTAWPLQTKTGRHAGEVRLILHYANARKPETSFAPSAPPY

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
159		88	11		0.923564
161	88			11	0.923564
163			88	11	0.999952
236	7	92			0.999664
238			7	92	0.999664
239			7	92	0.999664
240			7	92	0.999664
250		88		11	1.0
254		51		48	1.0
260		51		48	1.0
1180	87		12		0.992554
1227	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain