SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16923

Length: 1894 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16923

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE); aspartic-type endopeptidase [Arabidopsis thaliana] gb\|AAC34490.1\| expressed protein [Arabidopsis thaliana] gb\|AAL38345.1\| unknown protein [Arabidopsis thaliana] gb\|AAM47890.1\| unknown protein [Arabidopsis thal	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	90%
Blast2go	pollen development	GO:0009555	Biological Process	90%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	90%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	90%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase A22, presenilin signal peptide	IPR006639	-	0.0	90%
Blast2go	Peptidase A22B, signal peptide peptidase	IPR007369	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ43

Fln msg: your sequence is longer than subject: 353 - 298

Fln protein: MRMNEKLASAALAVLSVAPLVVNVNPNLNVVLTACLTVYVGCYRSVKPAPPSETMSKEHAMRFPLIGSVVLVSLFLLFKFLSKDLVNAILTSYFFVLGIIALSATLLPAIERFLPKKWNESPINFHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSREKGERYFKSAFIGYAVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKTSAQSSSADTSQSDGDAVVADGKPDHKSD*

Protein Length: 354

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGAATCTTTGCTGTTTAGTGTCGAGATCGTCGCGTTCGAAAGCCTCTTCTGCACACATTATCTTGTTTTGCATTTTTCATATCAAATCCAATTGAGGTGAATTTTGAATTGCCGAGGCCTGGTATCCCGGGTATTCGATCAGCC_-_ATGAGGATGAATGAGAAGCTCGCAAGTGCAGCTCTGGCAGTTTTATCAGTGGCACCACTTGTTGTAAATGTGAATCCAAACCTGAATGTAGTCTTGACAGCATGCCTTACTGTGTATGTTGGTTGCTATCGTTCTGTCAAGCCTGCACCACCTTCAGAGACCATGTCAAAGGAGCATGCAATGCGCTTTCCTCTGATTGGAAGTGTTGTGCTTGTTTCACTATTCTTGCTGTTCAAGTTCTTATCAAAAGACTTGGTCAATGCCATTCTCACAAGTTACTTTTTCGTTCTTGGGATAATTGCATTATCAGCCACATTGTTACCTGCTATTGAGCGTTTTCTGCCAAAGAAGTGGAATGAGTCACCAATAAACTTCCATCTTCCATATTTTAAATCTGTGGAAGTAGAGTTCACCAAATCACAGCTTGTGGCTGCTATTCCTGGAACATTTTTTTGCACGTGGTATGCATTGAAGAAACACTGGTTAGCAAACAACGTTTTGGGATTGGCATTTTGCATACAGGGTATTGAGATGTTATCTCTTGGATCCTTCAAAACTGGGGCTATCCTCTTGGCAGGACTCTTTGTATATGATATTTTTTGGGTATTCTTCACTCCAGTGATGGTTAGTGTAGCCAAGTCCTTTGATGCTCCCATTAAGCTGCTATTTCCCACAGCAGATGCAGCCCGGCCTTATTCTATGCTTGGGCTTGGTGATATTGTTATTCCAGGAATTTTTGTGGCTTTAGCTTTACGATTTGACGTCTCAAGAGAAAAAGGAGAACGATACTTTAAGAGTGCATTCATTGGCTACGCAGTAGGAGTGATTGTCACAATTATTGTGATGAATTGGTTTCAGGCAGCTCAACCTGCCCTTCTGTATATTGTTCCTGGTGTAATTGGATTTTTAGCTGTGCATTGCATTTGGAATGGGGAAGTCAAGCCATTGTTGGAATTTGATGAATCTAAGACTTCTGCTCAATCAAGTTCAGCCGACACATCTCAATCAGATGGAGATGCAGTAGTTGCAGATGGAAAGCCAGATCACAAATCAGATTAG___GAAAATAAGGAAGTCCATAATTTTCATCGTGGGTGCTATTACAAGTGCTCAAAACTGGGGCCTTTTCTTCGGCATCATTATCATATAATTCATAAATCAGCAGCAAATCAAATACGTGCTTGCTGGTATTTTCCATTTCAAAAAAGTGATCTAGAAACTGGACTCGTATTTTCTTCACTTTTACATGCTTTAAAAATTTCCTCTGGGCAGTTCAGCATGAGGGCATGTCTTCCATTTTGTACGGCATATTTCATGGATTTCTTATATTTGAGATTAGCTCTGATCTAAGAAGATGGGTGGTAATTTATCTTGTGATTACTAAGTTCATAATGCCCTCTGATAAAATATCTAACATTAAAATTATTGACAGCAAAGATAAATTCTTTCAGGTGTCTTATTTAGTGCAATTGTACATGTTAGTGGTTTATACATGTTGCCACAACATTTTGGGCCAGAGGCGGGATGCTTAAATTTTTTTGGCATCCCAATTGTATTGTTGGAAGCAATTGCATTCTTAGATGTTAACTTAAAAATTTTGAAAAATAGACGGTATTTTGAGGAGTAGTTGTTTCTCTCATTTTGTACTGATTTGCCCACCCTTATGCTATCTTTTGGAGCCTTACACTTTATGCTCTGCTAGAGGTTCAATGCTACATCTATTGATG

Fln Alignment:

sp_v1.1_unigene16923___MSKEHAMRFPLIGXXXXXXXXXXXXXXXXDLVNAILTSYFFVLGIIALSATLLPAIERFLPKKWNESPINFHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSREKGERYFKSAFIGYAVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKXXXXXXXXXXXXXXGDAVVADGKPDHKSD
A9NZ43_______________MSKEHAMRFPLIGSVVLVSLFLLFKFLSKDLVNAILTSYFFVLGIIALSATLLPAIERFLPKQWNELPINCHLPYFKSVEVEFTKSQLVAAIPGTFFCTWYALKKHWLANNVLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPYSMLGLGDIVIPGIFVALALRFDVSRKKGERYFRSAFIGYSVGVIVTIIVMNWFQAAQPALLYIVPGVIGFLAVHCIWNGEVKPLLEFDESKTSAQSSSSDTSQSDGDTVVADGKPDHKSD

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
130		49		50	1.0
200	43	56			1.0
405	84	15			0.999986
409			15	84	0.999986
410	15	84			0.999986
411			16	83	0.999991
413	83		16		0.999991
414	16			83	0.999991
417	83		16		0.999991
418	83		16		0.999991
419	81	18			0.999994
420		18	81		0.999994
443	16			33	1.0
445	80		20		0.995493
446			80	20	0.995493
448	25			75	0.996473
449	66	33			0.997452
450		66		33	0.997452
686		73		26	1.0
768	14			85	0.993533
803	83	16			0.994512
805		83		16	0.994512
807	83		16		0.994512
808	83			16	0.994512
810	16			83	0.994512
815			16	83	0.994512
817	83	16			0.994512
821	16			83	0.994512
823		83		16	0.994512
860			83	16	0.994512
861		83		16	0.994512
863			20	80	0.995493
864		20		80	0.995493
866			20	80	0.995493
868		80	20		0.995493
869	20			80	0.995493
870	80		20		0.995493
873	20	80			0.995493
874		20		80	0.995493
875	20			80	0.995493
880			14	85	0.993533
882		14	85		0.993533
887		14		85	0.993533
888	85	14			0.993533
892			14	85	0.993533
893		14		85	0.993533
894	85			14	0.993533
895			14	85	0.993533
899	85			14	0.993533
900		14	85		0.993533
901	14		85		0.993533
1154	75			25	0.996473
1155	75			25	0.996473
1156		25	75		0.996473
1157			25	75	0.996473
1162		75		25	0.996473
1163		75	25		0.996473
1165	50			50	1.0
1166		75	25		0.996473
1167	75		25		0.996473
1170			50	50	1.0
1171		50	25	25	0.995533
1172		25	25	50	0.995533
1175	66		33		0.997452
1177		66	33		0.997452
1179		33	66		0.997452
1181			33	66	0.997452
1183		33	66		0.997452
1184	66	33			0.997452
1800		16		83	0.994512
1807			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain