SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16911

Length: 1317 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16911

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME	-	-	1.0e-10	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	unknown [Picea sitchensis]	-	-	2.13032e-11	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	2.13032e-11	58%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	2.13032e-11	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Y5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence,

Fln protein: MSLGLRVEDRLDGHTNYSVWKERMQSIFEEAEVWDIMVHTAQNPVVVPTDATQLAEYKKKNNKGKRLILDGIKDHCIPHVRGKSNAHEMWTTLSNLYQSTNENRKMVLKEKLKNIKMGNDSAAGYLTKITNVRDELAAIGEAIPPTELVRIAVNGLPVHG*

Protein Length: 162

Fln nts: ATCAAGCTTGAGTGCTGAAGGGCAGTTTGGACAACAAAGGAAAATTTACAGCTGCTGATTTTTCACTCAGAAAATTCCAGCAAGCTAATTTTTTCATAAACAACAGTTTTATCTTTACTACAGCAGTGCTATTTTTCAGTTTTAGGACAGCAGG_-_ATGTCATTGGGATTGAGGGTGGAGGATAGGCTGGATGGGCATACAAATTACAGTGTTTGGAAGGAGAGAATGCAGAGTATCTTTGAGGAGGCAGAAGTCTGGGATATCATGGTGCATACCGCACAGAACCCTGTTGTTGTGCCTACTGATGCTACTCAGTTGGCTGAGTATAAAAAGAAGAACAATAAGGGTAAGAGGCTGATTCTAGACGGAATCAAAGACCATTGCATTCCTCATGTGAGAGGAAAGAGCAATGCCCATGAGATGTGGACAACATTGTCCAATCTCTACCAGAGTACCAATGAGAACCGGAAGATGGTCCTGAAGGAGAAGCTGAAGAACATTAAGATGGGTAATGATAGTGCAGCTGGATATCTCACAAAGATTACTAATGTGAGAGATGAGTTGGCAGCGATTGGAGAGGCCATTCCACCCACTGAGTTGGTGCGGATTGCAGTGAATGGCCTCCCCGTTCATGGATGA___ACTTTGCTGATGGGGTTTGTGCACGTGAGACCCTTCCCACATGGGAGAGGTTTTGGGATGATTGCATTCAGACAGAGATCAGGAAAGGTCAGCTTGGGGCAGCCAAGCCAGTTGAGCAGGATGAGGATGTAGCACTGTTGGCAGGAGGCAAGAAAGACAAAGGGAAAAAGCAAGGACTTCCACAAGCAGTGCTGGGGGAAAAGGCAAAGGTAAACAAAAGaAACACACAGAAGGACTATTCCAAGGTGAAGTGTTGGAATTGTCAAAAGATGGGACACTATGCAGTTGTGTGTCCAGAGAAGAAGAAGAAGAAGGGGAAGAACCAGGACGTGGCAGCTTCAGCAGAGATTGAGGACTTTGCAGGTCGTTTTGACCGGGAGTTTGCGTTCACTACGTGTGAGTCCTCTAGTGCAGGATCACCTGCCACACAGGTTCAGAGGGAGCATGCTTTTCCCTCGATTAGCGGAGCATCTTCAGGTATCTGGTATGTGGACAGTGGGGCTTCACGTCACATGACAGGAGTCCGTGAGTACTTCTCAGAGCTTTCAGAGAGTGGCACTGATATTGAGGTAGTACTCGGTGATGACAGAGTTGTTAGAGCAGTCGGGGTGGGGACAGTGACATTTCAGAGGGAGTCCCGACAGCCAAGGACACGACGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene16911___LILDGIKDHCIPHVRGKSNAHEMWTTLSNLYQSTNENRKMVLKEKLKNIKMGNDS-AAGYLTKITNVRDELAAIGEAIPPTELVRIAVNGLP
D5A8Y5_______________IIVDSIKDHLIPYISHFDSSKKMYDALTNLLSVRNIGLVMSLKNEPRDMKMNEDDIITSYFVRISQLRDQLQAIEEIISEKELVNIVLNGLP

SNPs (tot: 107)

Position	A %	C %	G %	T %	Probability
290			83	16	0.994512
311		83		16	0.994512
313		16	83		0.994512
316		16	83		0.994512
319		16		83	0.994512
325		33		66	1.0
362			83	16	0.994512
386		66		33	1.0
390	83	16			0.994512
391		16		83	0.994512
392	16		83		0.994512
411		60	40		1.0
426		80		20	0.995493
428	80		20		0.995493
435		80		20	0.995493
454		80		20	0.995493
471		20		80	0.995493
480	60			40	1.0
528	20			80	0.995493
552		20	80		0.995493
555	80	20			0.995493
556		20		80	0.995493
557	20		80		0.995493
560			20	80	0.995493
562		20	80		0.995493
563	25		75		0.996473
565	75		25		0.996473
566	50		50		1.0
578	66		33		0.997452
602		66		33	0.997452
636	80			20	0.995493
648	20		80		0.995493
663		75		25	0.996473
664	50		50		1.0
1025	14		85		0.993533
1032	84		15		0.999986
1033		84		15	0.999986
1034	23		69	7	1.0
1040			84	15	0.999986
1052	58	8	33		1.0
1062	25		75		1.0
1113	16			83	0.999991
1124		16	83		0.999991
1133	16	75		8	0.99999
1147	18		72	9	0.999994
1156		81	18		0.999994
1158	36		63		1.0
1164		81		18	0.999994
1165	18		81		0.999994
1169		10	90		0.90298
1172		90		10	0.90298
1177		90		10	0.90298
1184		11		88	0.923564
1188	11		88		0.923564
1195	11		88		0.923564
1198		88	11		0.923564
1199		11		88	0.923564
1200		11	88		0.923564
1202	11			88	0.923564
1203	88		11		0.923564
1204			11	88	0.923564
1205	11			88	0.923564
1206		11	88		0.923564
1208		11	88		0.923564
1209			88	11	0.923564
1210	11			88	0.923564
1211	88	11			0.923564
1226		75		25	1.0
1234	12			87	0.992554
1235		12		87	0.992554
1238	87	12			0.992554
1239		12	87		0.992554
1240	12	87			0.992554
1244		87		12	0.992554
1245	37		62		1.0
1246		12	87		0.992554
1247		12	87		0.992554
1248	12		87		0.992554
1249		12		87	0.992554
1253	14		85		0.993533
1254	85		14		0.993533
1261		85	14		0.993533
1264			14	85	0.993533
1265	14			85	0.993533
1266		85		14	0.993533
1269	85	14			0.993533
1270		14	85		0.993533
1271	14		85		0.993533
1272	14		85		0.993533
1273	85		14		0.993533
1274			71	28	1.0
1275			28	71	1.0
1276	28	71			1.0
1277	14	57	28		1.0
1278	28	42		28	1.0
1279	28	28	42		1.0
1281	14	71		14	0.984337
1282	33	33	16	16	1.0
1283			50	50	1.0
1286	50	50			1.0
1287	50			50	1.0
1288			50	50	1.0
1290	50			50	1.0
1291	25	50			0.995533
1293		50	25		0.995533
1295	50			50	1.0
1296		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
935	951	AGA AGA AGA AGA AGA AG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain