SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16892

Length: 2041 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16892
ATGGGGAGGTGTTGAGGGGATCTCGTGGCGCCTTATCCATGTGACCACACGTCGTGACCTTGGCTGTCACTCACCCACAAACCTAACGGCGTCGTGACCTTGGCTGTCACTCAATTTCGCGTTTTTCCAATCTCGGCTCCTTCGCCCTCTCAAACCCCCAAAATCCGTGCGTCTAAAACCACAAACACCGAGCACGAACGATCGCAGCAGATGCACAATTTACTCGCAGAATCCAGAAAGAGAAGAATTCATTTCCAGTGGTTTTGACAGCTTGATAAAACACTAAAACCAAGATGGTTTCCGAGCAAGAAATCGCAGAGCGCCTGAAGGAAATTCTGCAGACTGCGGACTTAACGACTACTACGACTGCGAGCATTCGGCGTAAGCTGGAAGAGGAACTTGGAGTTGATTTGACGAGCAAGAAGGCCTTCATTAGAGAGCAAGTAGACCTTTATTTATTGCACCAACAAGAGCAACTGGAGAACAATGAGGCCAAGGAAGAAGGCGATGAGGGCCTAGAAAATGAGGTTAAAGAGGAAGAGCAGTCTTCTGAACAGCCCGGCGATGAAGAAGAGGACGAAGAAGAAGACGATGACGGCGGAAGTGCCAAGCGTAGCCATAAAAGCAGTTCAAATAAGGAAAAGACCAAAAAAGGAACAGGTGGTGGCTTCACCAAGTTATGTGGTCTTTCTCCAGAGCTACAGTCAGTCCTTGGGGTATCTGAGTTATCCAGAACCCAGGTTGTGAAGCAACTTTGGGTTTACATTAGGGAAAATGATTTGCAAGATCCACAAAACAGGCGAAAAATCCTGTGTGATGAGAAATTACGCTTGGTGTTCAGAAAAGATTCAGTTGACATGTTTGAGATGAACAAAGTACTTTCAAATCATATTTTGCGGCTAGAAAATGGAAATGTGGTTTCAGAGGACTCAGAACCAAAGGCAAAACGACAGAAACAAGAGAAAAAAGGTTCGGAAGATTCAGAATCAAAGTCAAAACGGCGGAAGCAAGAGAAAAAAGAAGGTGGTAGTGGGAAAAATTCTGGATTCTGTACTCCTCTTCCCCTCTCTGATGCTCTTGTCACATTTCTTGGTACTGGTGAAAGTCAGTTGTCCCGAGCAGAAGTGGTGAAGCGAATATGGGGGTACATAAAAGATAAGAATTTACAGGATCCTTCAGATAAGAGGAGAATTGTTTGTGACATGAAACTACGGGAGCTATTTGGGTGTGATACATTTAATGGTTTTGGTGTTACCAAGCTCTTAACTACTCATTTCATGAAAACATAGGCATTTTGTTGCAGTTGTGTATAAGTGTTCTCAGGAAATGAGGCAAGTTTTGTTAGCTGCAATGTAAAGTAAATGCGTCTACAACCCTGTGCTTTTTTCTTTTCATTTTTGGGTTTTCTAGGAAAAGCTCTGCTTCTTTAGTATGCCTTTTATTGTCACCGCTACACTGTACTCAGGTTCACTAATTTCATTTCAATCAGGTTTGGGGCTGTTCTCAGCTGTACTTGCATACAGGGTCTGGATTAAGGCATGTTTGCTTGTGAAGAAAGGAATGAGCTGTAGCATAATTGGTTCCTGCGCATATCTGTAAAGTTTTGGTGGTTAAGCATTTAGAATAAATGGCTATTCTTACAAACTGACTTGGTGGATAACTTATTCTGATACCTTGTTTCATGCAAGTTGCATTGCTTAGCCGTCTTAGCTTCTGAAACTGGAAAGCTTGATTGAAGGCATTTTTATTTTCCAAATGTGATTATAAAATAGACAATTTAAGCAAATTAACTATCTATACTGAACCATGCATTCACTTCATCCTTTGTAGGTTTATTCCTTGGCTGAATGCCTAGTTTTTTGGGATACACTATGATGATTAGAATGTACACATCACAATTTCACAGATTGATCCTTGTTCCCTATTAATATCTTATTTGTGCTTTGCATCAGCAATTCAAATTTTGTCATTATCCTGTAGCGCCCATCAAATGGTCGTCAATGTAAGTTATTGGGTCAATTGTTATGTAGTCTAAATTTTG

Ace file of the UniGene sp_v1.1_unigene16892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Upstream activation factor subunit UAF30, putative n=1 Tax=Ricinus communis RepID=B9S8L0_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	swib mdm2 domain containing protein	-	-	64%

Source	InterPros	Term	Type	Identity
Blast2go	SWIB/MDM2 domain	IPR003121	-	64%
Blast2go	DEK, C-terminal	IPR014876	-	64%
Blast2go	SWIB domain	IPR019835	-	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW56

Fln msg: your sequence is longer than subject: 332 - 297

Fln protein: MVSEQEIAERLKEILQTADLTTTTTASIRRKLEEELGVDLTSKKAFIREQVDLYLLHQQEQLENNEAKEEGDEGLENEVKEEEQSSEQPGDEEEDEEEDDDGGSAKRSHKSSSNKEKTKKGTGGGFTKLCGLSPELQSVLGVSELSRTQVVKQLWVYIRENDLQDPQNRRKILCDEKLRLVFRKDSVDMFEMNKVLSNHILRLENGNVVSEDSEPKAKRQKQEKKGSEDSESKSKRRKQEKKEGGSGKNSGFCTPLPLSDALVTFLGTGESQLSRAEVVKRIWGYIKDKNLQDPSDKRRIVCDMKLRELFGCDTFNGFGVTKLLTTHFMKT*

Protein Length: 333

Fln nts: ATGGGGAGGTGTTGAGGGGATCTCGTGGCGCCTTATCCATGTGACCACACGTCGTGACCTTGGCTGTCACTCACCCACAAACCTAACGGCGTCGTGACCTTGGCTGTCACTCAATTTCGCGTTTTTCCAATCTCGGCTCCTTCGCCCTCTCAAACCCCCAAAATCCGTGCGTCTAAAACCACAAACACCGAGCACGAACGATCGCAGCAGATGCACAATTTACTCGCAGAATCCAGAAAGAGAAGAATTCATTTCCAGTGGTTTTGACAGCTTGATAAAACACTAAAACCAAG_-_ATGGTTTCCGAGCAAGAAATCGCAGAGCGCCTGAAGGAAATTCTGCAGACTGCGGACTTAACGACTACTACGACTGCGAGCATTCGGCGTAAGCTGGAAGAGGAACTTGGAGTTGATTTGACGAGCAAGAAGGCCTTCATTAGAGAGCAAGTAGACCTTTATTTATTGCACCAACAAGAGCAACTGGAGAACAATGAGGCCAAGGAAGAAGGCGATGAGGGCCTAGAAAATGAGGTTAAAGAGGAAGAGCAGTCTTCTGAACAGCCCGGCGATGAAGAAGAGGACGAAGAAGAAGACGATGACGGCGGAAGTGCCAAGCGTAGCCATAAAAGCAGTTCAAATAAGGAAAAGACCAAAAAAGGAACAGGTGGTGGCTTCACCAAGTTATGTGGTCTTTCTCCAGAGCTACAGTCAGTCCTTGGGGTATCTGAGTTATCCAGAACCCAGGTTGTGAAGCAACTTTGGGTTTACATTAGGGAAAATGATTTGCAAGATCCACAAAACAGGCGAAAAATCCTGTGTGATGAGAAATTACGCTTGGTGTTCAGAAAAGATTCAGTTGACATGTTTGAGATGAACAAAGTACTTTCAAATCATATTTTGCGGCTAGAAAATGGAAATGTGGTTTCAGAGGACTCAGAACCAAAGGCAAAACGACAGAAACAAGAGAAAAAAGGTTCGGAAGATTCAGAATCAAAGTCAAAACGGCGGAAGCAAGAGAAAAAAGAAGGTGGTAGTGGGAAAAATTCTGGATTCTGTACTCCTCTTCCCCTCTCTGATGCTCTTGTCACATTTCTTGGTACTGGTGAAAGTCAGTTGTCCCGAGCAGAAGTGGTGAAGCGAATATGGGGGTACATAAAAGATAAGAATTTACAGGATCCTTCAGATAAGAGGAGAATTGTTTGTGACATGAAACTACGGGAGCTATTTGGGTGTGATACATTTAATGGTTTTGGTGTTACCAAGCTCTTAACTACTCATTTCATGAAAACATAG___GCATTTTGTTGCAGTTGTGTATAAGTGTTCTCAGGAAATGAGGCAAGTTTTGTTAGCTGCAATGTAAAGTAAATGCGTCTACAACCCTGTGCTTTTTTCTTTTCATTTTTGGGTTTTCTAGGAAAAGCTCTGCTTCTTTAGTATGCCTTTTATTGTCACCGCTACACTGTACTCAGGTTCACTAATTTCATTTCAATCAGGTTTGGGGCTGTTCTCAGCTGTACTTGCATACAGGGTCTGGATTAAGGCATGTTTGCTTGTGAAGAAAGGAATGAGCTGTAGCATAATTGGTTCCTGCGCATATCTGTAAAGTTTTGGTGGTTAAGCATTTAGAATAAATGGCTATTCTTACAAACTGACTTGGTGGATAACTTATTCTGATACCTTGTTTCATGCAAGTTGCATTGCTTAGCCGTCTTAGCTTCTGAAACTGGAAAGCTTGATTGAAGGCATTTTTATTTTCCAAATGTGATTATAAAATAGACAATTTAAGCAAATTAACTATCTATACTGAACCATGCATTCACTTCATCCTTTGTAGGTTTATTCCTTGGCTGAATGCCTAGTTTTTTGGGATACACTATGATGATTAGAATGTACACATCACAATTTCACAGATTGATCCTTGTTCCCTATTAATATCTTATTTGTGCTTTGCATCAGCAATTCAAATTTTGTCATTATCCTGTAGCGCCCATCAAATGGTCGTCAATGTAAGTTATTGGGTCAATTGTTATGTAGTCTAAATTTTG

Fln Alignment:

sp_v1.1_unigene16892___MVSEQEIAERLKEILQTADLXXXXXASIRRKLEEELGVDLTSKKAFIREQVDLYLLHQQEQLENNEAKEEGDEGLENEVKXXXXXXXXXXXXXXXXXXXXXXXXAKRXXXXXXXXXXXXXXXXXXXXXLCGLSPELQSVLGVSELSRTQVVKQLWVYIRENDLQDPQNRRKILCDEKLRLVFRKDSVDMFEMNKVLSNHILRLENGNVVSEDSEPKAKRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCTPLPLSDALVTFLGTGESQLSRAEVVKRIWGYIKDKNLQ
A9NW56_______________MVLEQEIAERLKEILQTADLTTTTTTSIRRKLEEELGVDLTSKKAFIREQVDLYLLQQQQQLENNEVKEEADEGIENEVKEEEHSSEQPGDEEEDEEEDEDEGSGKRSKKSSSNKEKSRKGTGGGFNKLCGLSPELQSVLGVSELSRTQVVKQLWVYIRENDLQDPQNRRKILCDDKLRSVFRKDSIDMFEMNKVLSNHILRLENGNVVSEDSEPKSKRQKQEKKGLEDSESKSKRQKQEKKDGGRVKSSGFCSPLPLSDALVTFLGTGESQLSRAEVVKRIWGYIKDKNLQ

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
179	83		16		0.999991
180		83	16		0.999991
181		83	16		0.999991
1401		14		85	0.993533
1404		14	85		0.993533
1407			14	85	0.993533
1408	14			85	0.993533
1409		14		85	0.993533
1412	87			12	0.992554
1416	87	12			0.992554
1417	87			12	0.992554
1418	87		12		0.992554
1419			87	12	0.992554
1421	12			87	0.992554
1426	12			87	0.992554
1469		16	83		1.0
1470			16	83	1.0
1473	83		16		1.0
1474		83		16	1.0
1475			16	83	1.0
1477	83	16			1.0
1480			16	83	1.0
1481		83	16		1.0
1482	83	16			1.0
1484			16	83	1.0
1488	83	16			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain