SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16886

Length: 1427 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16886

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Regulator of ribonuclease activity A, putative; K02553 regulator of ribonuclease activity A	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	regulator of ribonuclease activity	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of RNA metabolic process	GO:0051252	Biological Process	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	ribonuclease inhibitor activity	GO:0008428	Molecular Function	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMH8

Fln msg:

Fln protein: MANFATADLCDTYQSHVTDGGLRVLQPIFQTYGSRKSFCGPIATLKVFEDNVLVREMIEEQGKGRVLVVDGGGSLRCALLGGNLAMLAQNNGWNGVIVNGCIRDVDEINRCDIGVRALATHPLKSNKKGVGDKNGVVFIGGTRIAHGEWCCADSDGVIISPTELSL*

Protein Length: 168

Fln nts: CAGCCACATACCGTTTTTAGCTTGTATCGTCACTTGCCATTTGTACAAAATATCATCAGTTGCGTATGCTGTTCGGCAAAATCTCATCAGTTGCGTATGCTGTTCGGCAAAGCATCGGGCAGATAATTCAAGCTGATATTTCAGTATTATTACTACATTTGGATTGCCCGAGATACCTCGGGCTTTTCTATAAAAGCGATTCCTGGAGGCAGATAGGGAGATCAATGCGATTTTTTGGTTAAATATCTGTCTCCCGACGTTTTTTCCTGTGAATATCTTGTAGAACCCAAGATCCTAATC_-_ATGGCGAATTTCGCTACAGCGGATTTGTGCGATACGTATCAAAGTCATGTCACGGATGGAGGGCTGAGGGTGTTGCAGCCCATATTCCAAACTTATGGAAGCAGAAAATCCTTCTGCGGGCCTATTGCAACCCTGAAAGTATTTGAAGATAATGTGCTGGTGAGAGAAATGATTGAAGAGCAGGGGAAGGGAAGAGTGCTCGTCGTGGACGGAGGGGGAAGCTTAAGGTGCGCTCTGCTTGGTGGAAATTTGGCAATGCTGGCTCAGAATAATGGCTGGAATGGGGTTATTGTTAATGGGTGTATTAGGGATGTTGATGAGATTAACAGGTGTGACATTGGAGTGAGAGCTCTGGCAACCCATCCACTGAAATCGAACAAGAAAGGGGTTGGGGACAAGAATGGCGTGGTCTTTATCGGCGGCACCAGAATTGCCCATGGGGAATGGTGCTGTGCAGACAGCGATGGCGTCATCATATCACCAACAGAGCTCTCCCTGTGA___TGGGTTCGATCTTTTCATCTCCGGAAATATTTAATTAATGAAGTAGTTTATGCAATGTCGGTTAACTTGGGATGTAGTGTCGTTAATGCTTTTGTTAACCCTGTAACTGATTTAATAGAATGAATAAGTGAATGCAAATGGCATACTCTGTCTTTTGGATCTAGTGTGCAGTTGATATCCATTCCATTCTTGCTCTGGGTGGTTTATGTTAACCCTAGCTCTGCACACTGTAAGGGATTTTGGGTAGATATCCAAGTTATTGAAAAGTATAGTTTCAATTAGCAAAGAAAGCAGTGTATTGGAAATTTTGAAGCTAAGAAAGCAACTGGAAGACACTGATCTTTGAAAGCATGTGATTCAATAAAGCTTGCCTTCTTAAGGTATAAATTACATTTTCATCATATCTTTATGGGAATTGAATATATATCTCTGTAATAAGAATGGAATTGGGTTTCACAACACAGGAACCTGTTTTGTTCTAGAGTACTATGTTGTCACTTTATAATTCCAAATGGATGTGTGATCTTATCCCATAAATCCAAATGAAAATGGATGGTCTCCTATTTCTTATATTTCAATCCTTGGCCCACCTTCCACCTCTGTGAAAATGGATTGTATAGTACTAT

Fln Alignment:

sp_v1.1_unigene16886___MANFATADLCDTYQSHVTDGGLRVLQPIFQTYGSRKSFCGPIATLKVFEDNVLVREMIEEQGKGRVLVVDGGGSLRCALLGGNLAMLAQNNGWNGVIVNGCIRDVDEINRCDIGVRALATHPLKSNKKGVGDKNGVVFIGGTRIAHGEWCCADSDGVIISPTELSL
A9NMH8_______________MANLATAELCDTYQNHITDGGVRVLQPIFQSYGRRNSFCGPVATLKVFEDNVIVREMIEEQGKGRVLVVDGGGSLRCALLGGNLAVLAQNNGWNGVIVNGCIRDVDEINRCDIGVRALATHPLKSNKKGVGDKNGVVFIGGTRIAHGEWCCADSDGVIISPTELSL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
457			11	88	0.923564
619	91	8			0.999766
798	11	88			0.999952
804		11		88	0.999952
837	90	9			1.0
838		3	6	90	0.996531
840	90	6			0.996531
841	90		6	3	0.996531
845	90	6		3	0.996531
846			93	6	0.99903
848	93		6		0.99903
852	3	6		90	0.996531
854		6		93	0.99903
855			93	6	0.99903
930	95	4			0.99692
934	92	4			0.98868
935	92		4		0.98868
938	4	95			0.997494
939	95	4			0.997494
940	95	4			0.997494
941	95			4	0.997494
946	95		5		0.997749
953	5		94		0.997984
1040	88			12	1.0
1206	50		50		1.0
1285			71	28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain