SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16885

Length: 1192 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16885 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ, putative	-	-	1.0e-32	58%
FL-Next	tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	44%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	5.49037e-38	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	5.49037e-38	66%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	5.49037e-38	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	5.49037e-38	66%
Blast2go	Heat shock protein DnaJ	IPR003095	-	5.49037e-38	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40868

Fln msg: your sequence is longer than subject: 209 - 158

Fln protein: MSGEDGEIKDFYSVMGVKSDCTSSELRAAYKKLAMRWHPDRWSASGNAKVAEESKKKFQAIQEAYSVLSDENKRFLYDAGVYEDDDDDEMGDFLDEMAVLMNENKGQVSGSESFEQLQDLFMEMFESDLNSFHTPAKPSSNKRNRSDFHRGGAVRKEEIAEPSFMSSSPFQTPSFSGGGQDDYDVGNGKGRRRTGMKHSVNCSVSVEH*

Protein Length: 210

Fln nts: ATGGGGAGAAAAGCGTCGTGACCTTGGCTGTCACTCTAATATTTTTGCCTCTCTGCTTTTCTATTTTCTACGGTTTATGCCGAGTTATGAGATGATTCACGCTTCTGCAGCTGTTACTGGTTATGTTCTTTTGACCTAATTCCATTAATTTGTCGACATAACAAATGTGATTGCGGTGGATAATTGTGGAGGATAGCAATTCTGTATTTCTCTGCGAATTGAACCAGACATA_-_ATGTCCGGGGAAGATGGAGAAATTAAAGACTTTTACTCAGTAATGGGGGTTAAATCCGACTGTACTTCTTCAGAACTTAGGGCTGCTTACAAGAAGCTCGCAATGAGATGGCACCCGGACAGGTGGTCTGCCTCAGGGAATGCAAAGGTAGCAGAGGAGTCTAAGAAGAAGTTTCAAGCAATCCAGGAGGCTTATTCAGTTTTGTCAGATGAGAACAAGAGATTCCTGTACGATGCAGGGGTTTATGAAGACGATGATGATGATGAAATGGGAGACTTTTTGGATGAAATGGCGGTACTGATGAATGAGAATAAGGGGCAGGTGAGTGGATCGGAGAGCTTTGAGCAGTTACAAGATCTGTTCATGGAGATGTTTGAGAGCGATCTCAATAGCTTTCACACACCTGCGAAGCCTTCCAGCAATAAGAGGAATCGATCCGATTTCCACAGGGGCGGAGCCGTGAGAAAAGAGGAGATTGCAGAGCCGAGCTTCATGAGTTCGAGTCCCTTCCAGACACCATCTTTTAGCGGGGGTGGTCAAGATGATTATGATGTGGGGAATGGAAAGGGAAGAAGAAGAACTGGAATGAAACATTCAGTGAATTGTTCTGTCAGTGTTGAGCATTGA___AGTTTAGAACATTCCTATCGCGAAATTGGTGGTAGGAAGAGGGGCAGGGTTTAGTTGAAGGATTTCATGAACAGGGTCAGGGTTTAGTTGATGGATTTCATTTTTCCAATTGGAGAGGAGGATAGGAGTGGCAGGCACTAAAATTACAGTGCCATCCATTGTTGTTGGATGATAATTTATTGGAAAATTGATGTAAGGAGTAAGATGGGATTTATTATGATGATGGATTTCTGTTATCTCTTTGAAATCATGCCATCCCAACCAACGACGTTGTGACCAAACCGTTTACGTTTTGTTTTTAGTATCTTCATTTTGAATTAACGGTTGTTGTCT

Fln Alignment:

sp_v1.1_unigene16885___FYSVMGVKSDCTSSELRAAYKKLAMRWHPDRWSASGNAKVAEESKKKFQAIQEAYSVLSDENKRFLYDAGVY-XXXXXXXXXXXXXEMAVLMNENKGQVSGSESFEQLQDLFMEMFESD------------LNSFHTPAKPSSNK
Q40868_______________FYSILGVNKDSSSAEIRSAYRKLAMKWHPDKWSTDPSS--SETAKLRFQQIQEAYSVLSDDTKRALYDAGMYEPSEDMDAFCDFLDELSSLIATVKVQSNKDDELLQLQEMFTKMLEEDWFSTDNFEAFKEISSQHSDDKPENGQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
481		11		88	0.923564
531	10			90	0.90298
533	10	90			0.90298
534			10	90	0.90298
536		10		90	0.90298
537	10			90	0.90298
539			10	90	0.90298
540			10	90	0.90298
541			90	10	0.90298
543	10			90	0.90298
544		10	90		0.90298
547	90	10			0.90298
991	11		88		1.0
1117	88		11		1.0
1121	7	92			0.999664
1123		12		87	1.0
1152	20			73	1.0
1156	33			26	1.0
1160	33			66	1.0
1165	66			33	1.0
1168	26	73			1.0
1169	66	6	26		1.0
1173		7		76	0.999983
1175	76		7		0.999983
1182		33		66	0.997452
1183	33			66	0.997452
1187	33	66			0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
381	392	TTC TTC TTC TTC	12
695	708	TCA TCA TCA TCA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain