SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16876

Length: 961 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16876

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast chlorophyll A-B binding protein n=1 Tax=Gossypium hirsutum RepID=C1K5D1_GOSHI	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	chlorophyll a b binding	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	86%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	86%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKX0

Fln msg: your sequence is shorter than subject: 224 - 288

Fln protein: RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPAEFLQYDIDSLDQNLDKNLPGDLMGNFVGDPEIKPSIVPYSEVFGLQRFRECEVIHGRWAMLGVLGALAVEGFTGVYWQDAGKVELVEGSSYFGLPLPFNMSSLIIIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAADETKKDRLKLAEIKHARLAMVASLIFAIQAAVTSKGPLTLFVEFLGKK*

Protein Length: 225

Fln nts: AGGCCCCTGTGGCTGCCCGGCGCCAAGGCCCCCGAATGGCTGGACGGGTCTCTGGTGGGTGACTACGGGTTCGATCCTCTGGGCCTCGGCAAACCCGCTGAGTTTTTACAGTATGACATTGATTCTCTGGACCAGAACCTCGACAAAAACCTCCCCGGAGACCTCATGGGAAATTTCGTCGGAGACCCCGAAATCAAACCCTCCATCGTACCCTACAGTGAAGTCTTCGGATTGCAGAGGTTCAGAGAATGTGAGGTCATCCATGGCCGCTGGGCCATGCTCGGTGTTCTAGGCGCCCTCGCTGTGGAGGGCTTCACCGGCGTATACTGGCAAGACGCCGGAAAGGTTGAGCTTGTGGAGGGCTCCTCCTACTTTGGGTTACCATTGCCCTTCAACATGTCATCGCTGATAATAATCGAGGTGTTGCTGCTGGGTTACATCGAGTTCCAGAGAAATGCAGAGGTGGATCCAGAGACGAGGTTGTATCCCGGAGGCAAATACTTTGACCCTTTTGGCCTGGCAGCCGATGAGACCAAGAAGGACCGGTTGAAGTTGGCAGAAATTAAGCACGCTCGTCTGGCTATGGTGGCCTCCCTTATATTTGCGATCCAGGCCGCTGTGACTAGCAAGGGTCCTCTCACCCTCTTCGTTGAGTTCTTGGGCAAGAAATAG___AGTGTCAGTGTCTGATTCAGAGCATTGGATTTTCCTCTGCAAATTTTCAGTATTGTTGTATATGTAGATTTGAGATGTTTGTAATGAAAATACTGGCTTTAATTGATGAGCTTATGTCTTTGTATAGTTGACAGGCCTCAGGCCTCCTGTTATTTTATGTTAATTGAACAGATAGATGCTATGATTTTACAGATACTTTCCAGTCTTCCGAAGATGAATTAAACTGCGAAGCAATCACTCAATAATTAATTGGTTTATGATTATAATATTTTGAACGACTGATCTGGTT

Fln Alignment:

sp_v1.1_unigene16876___RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPAEFLQYDIDSLDQNLDKNLPGDLMGNFVGDPEIKPSIVPYSEVFGLQRFRECEVIHGRWAMLGVLGALAVEGFTGVYWQDAGKVELVEGSSYFGLPLPFNMSSLIIIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAADETKKDRLKLAEIKHARLAMVASLIFAIQAAVTSKGPLTLFVEFLGKK
A9NKX0_______________RPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLAMVAFLIFAIQAAVTSKGPLTLFVEFLGKK

SNPs (tot: 5)

Position	C %	G %	T %	Probability
270	95	4		1.0
271		4	95	1.0
776	6		93	1.0
780	1	94		0.930835
784	4		95	0.994598

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain