SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16868

Length: 1027 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16868

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amidase, putative (EC:3.5.1.4)	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	amidase family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidase.	EC:3.5.1.4	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Arginine and proline metabolism	00330		82%
Blast2go	Phenylalanine metabolism	00360		82%
Blast2go	Tryptophan metabolism	00380		82%
Blast2go	Cyanoamino acid metabolism	00460		82%
Blast2go	Aminobenzoate degradation	00627		82%
Blast2go	Styrene degradation	00643		82%
Blast2go	Biosynthesis of plant hormones	01070		82%
Blast2go	Ligases, Forming carbon-nitrogen bonds, Carbon--nitrogen ligases with glutamine as amido-N-donor.	EC:6.3.5.-	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tetracycline biosynthesis	00253		0.0	82%
Blast2go	Biosynthesis of secondary metabolites	01110		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	amidase activity	GO:0004040	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	82%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	82%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	82%
Blast2go	Tetratricopeptide TPR2	IPR013105	-	82%
Blast2go	Tetratricopeptide repeat	IPR019734	-	82%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
546	84	7	7		0.99801
549	7			92	0.999602
550		92	7		0.999602
551	88	7	3		0.998862
555	88	7	3		0.998862
560	92	7			0.999602
601	90	10			1.0
603		90		10	1.0
604	90	10			1.0
605		90	10		1.0
606	90			10	1.0
607		90	10		1.0
609		10	90		1.0
613	89	10			1.0
616	89	10			1.0
618	89	10			1.0
619			89	10	1.0
621	3			89	0.998304
622	6		93		0.999453
888	89		10		0.999919
1006		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain