SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16844

Length: 1070 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16844

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar proton pump subunit F n=1 Tax=Corchorus olitorius RepID=A7LIT9_9ROSI	-	-	79%
FL-Next	sp=V-type proton ATPase subunit F; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	vacuolar atp synthase subunit f	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Oxidative phosphorylation	00190	94%
Blast2go	Photosynthesis	00195	94%
Blast2go	Methane metabolism	00680	94%
Blast2go	Metabolic pathways	01100	94%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	94%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	94%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	94%
Blast2go	vacuole	GO:0005773	Cellular Component	94%
Blast2go	proton-transporting V-type ATPase, V1 domain	GO:0033180	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
477		86		13	0.999973
478	86		13		0.999973
479	86		13		0.999973
480	86		13		0.999973
531		5	94		0.998894
558		95		4	0.994598
559	95			4	0.994598
563		95		4	0.994598
566			95	4	0.994598
697	93	6			0.999999
698	95		4		0.996599
700			4	95	0.996599
704		4		95	0.99692
705		4	95		0.99692
708			4	95	0.997218
710	95			4	0.997218
712			95	4	0.997218
713		4	95		0.997218
735	93			6	0.999999
981	12	75			0.975346
983	85	14			0.993533
984	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain