SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16841

Length: 1300 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16841

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-responsive family protein (Fragment) n=3 Tax=Pinaceae RepID=C6F9X0_PSEMZ	-	-	4.0e-33	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	auxin-responsive family protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR77

Fln msg: your sequence is shorter than subject: 167 - 184

Fln protein: MTYTSALKLSSGSLSGNYNFIVGSPVGIEVHMGGNEPHHNIHRPHFRMPHSLHLPHFHLHFHHHDGHHGGSKKEGHDFHKVVPKGCVAVYVGSEGEQQQRFVIPVVYVNHPLFEKLLKEAEEEYGFEQKGTITIPCHVSDFQYVQGLIDEERHHSHSSGGNSFCFR*

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTCCCCGGATCTGCCGTCTGATTTGCTTTTCCTGGAAGTAATCGAGCCAGCAGGCCTCCGATTTTGGTATCTGTATTTAGGTTATCAGAGTCGTTTTTTCTTCATTATGTGAAATTTGTGTTTGATTTTCGAATATGTCCAACGTTCCCCGATCTCTGTGCGACGTCTGTCTGACTCTGTTCAGGTTAGCCATTTCCGTGGCAGATCCCTGGCCCTTTTCTTTGACAGCCGCTCAAATTTCCTACCCAGGCTGTGGCATCTTCCTCTAGCCCTAGTCGGTCCATTGCAAGTTTTTTAGGGTTAGCCCTTTCCGCCCTGGGACTCGGTA_-_ATGACGTACACTAGCGCTCTGAAATTGAGTTCTGGTAGCCTCTCTGGTAACTACAACTTTATTGTTGGAAGCCCTGTAGGCATCGAGGTGCACATGGGAGGCAACGAACCACATCATAATATTCATCGCCCTCATTTCAGAATGCCCCATTCGCTGCATCTCCCTCACTTTCATTTGCATTTTCACCACCACGATGGCCACCATGGTGGCTCCAAGAAAGAGGGTCACGATTTTCACAAGGTCGTTCCCAAGGGTTGCGTGGCGGTCTACGTGGGCAGCGAAGGAGAACAGCAGCAGCGTTTCGTAATACCGGTGGTGTATGTCAACCATCCTTTGTTCGAGAAGCTTCTCAAGGAAGCCGAGGAAGAATATGGATTTGAGCAGAAGGGCACCATCACTATTCCTTGCCATGTGTCGGACTTCCAGTACGTTCAAGGCCTTATCGACGAAGAACGACACCATTCTCACAGTAGCGGTGGCAACAGCTTTTGTTTTCGGTAG___GCTGCGATTGGTCGTAAGCTGTTGTGGATATTTGTCTAAGTTGTCGTAGATATTAATGGATATTGATCCTTAAAATGTTGGGGATATTCTATTGAATTATTGGTCACAACCGTCTCAGAACATTATATTTAAAATTTGAAATTCTACACTATTATTTCTAGATCTGTAAATTACAATGATGAAATGAATTATCATAAAACTGTATTGCTAGGGTTCCTGAGACCTTTGAATTTAGGGTTACACAAATCTGTGGATGGTCTATCACAGGGTTCCTGAGACCTTTGAATTTAGGGTTACACAAATCTATGGATGGTCTATCGCACCAATGTCTAGGGCATTATTCATATTTATGGATATCTGTATAATAGAAATCTTTGTTGAATGGAAACTGTGGACGATATTTTAAATTTGTTTTTGTGGCTGCCATGAGATGAGGCAAACGT

Fln Alignment:

sp_v1.1_unigene16841___MTYTSALKXXXXXXXX---NYNFIVGSP-VGIEVHMGG---------NEPHHNIHRPHFRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHKVVPKGCVAVYVGSEGEQQQRFVIPVVYVNHPLFXXXXXXXXXXYGFEQKGTITIPCHVSDFQYVQGLIDEERHHSHSSGGN------SFCFR
A9NR77_______________MTYTSALKLNSGRPSIISGKYNFTVGNPNSGAAVHMGGGNAWLSSQGNDPHHHIHRPHFRMPHSLHFPHFHLHFHHHDAHGGSKKEGHD-FHKDVPKGCVAVYVGSEGEQQQRFVIPVVYVNHPLFEKLLKEAEEEYGFEQKGTITIPCHVSDFQYVQGLIDEERHHSHSGGGSGGGGGGGFCFR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
21		66		33	0.997452
22			33	66	0.997452
23		66	33		0.997452
24	66		33		0.997452
513	28	71			1.0
514	71		28		1.0
516		71	28		1.0
517	28			71	1.0
519		71	28		1.0
520		71	28		1.0
521		28		71	1.0
526			28	71	1.0
527	16			83	0.994512
528		83	16		0.994512
531		16		83	0.994512
537			16	83	0.994512
538			16	83	0.994512
539			16	83	0.994512
566		50		50	1.0
817	80		20		0.995493
819		20		80	0.995493
820		80	20		0.995493
822		80	20		0.995493
825	80	20			0.995493
826			80	20	0.995493
828	80		20		0.995493
831			80	20	0.995493
834		20	80		0.995493
835	20		80		0.995493
838	80			20	0.995493
876		66		33	0.997452
913	80	20			0.999996
919	90	10			0.90298
921		10		90	0.90298
922	10		90		0.90298
938			80	20	0.999996
1006		85		14	0.999981
1251			88	11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain