SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16813

Length: 1675 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16813

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	1.0e-36	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	zinc finger	-	-	0.0	56%

Source	GOs	Term	Type	Identity
Blast2go	photomorphogenesis	GO:0009640	Biological Process	56%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	56%
Blast2go	intracellular	GO:0005622	Cellular Component	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP97

Fln msg:

Fln protein: MMNIMKNCSIDLEGSESYFSEESVISQQLSASNVSAGLESSLFSQQQHQPHYMFQVQENAPKSREKSSTEDFKLEETSEVSLNLTIGYDDEGGGTVREGKDLQTSNFIDYFGQSNHTEEAENEHDASVDTKGPLESSNEVGHPATYPESSSLSAQGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGAFQHRYISMASLPLHGSTESATGQMNRSLGIKAHSLIHKPPYAEPSLPLSHHGWSRPPIEQHPAVGKYVMEDMGSSRMIVGNRGGVARFENNNFGAGRILGANPFLHEEPASFCWPGSFRRMQQQSQEGGSYHTQNHETSSNAFYLKPQDDISKLDLSLRL*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTCCTCCCGTGTTTGTCAGTCGTCAGAAATCTGCAGCAGGCGGCCCAATTGACAGAGAACGCCTGTTGCCTGCTTCGGCCTCTGCAGATGCAAGTGACCATCGCCATTTCTTGCCTGTTCGCCCTTCTCTGCCATGGGACCATCTTCCTCAAAGTTCAAGGGTGGGTTGCAACCGTAAGAGATATGGGAGGGACGGCACGCTAAAGTACCTGCCTAGTTTGATTTCAGCCTTTATTTTGTGAGGGCTAGAGCTTTTTGATGGGAAAATGTAGATGCAAGCACGCATAAGCAT_-_ATGATGAATATTATGAAAAATTGTAGCATTGATTTGGAAGGAAGTGAGAGTTATTTCTCAGAGGAGTCGGTTATCAGCCAGCAGTTATCAGCCTCCAATGTTTCTGCTGGTCTCGAATCATCATTGTTTTCCCAGCAGCAGCACCAACCCCACTATATGTTCCAGGTCCAGGAGAACGCACCCAAATCTAGGGAGAAGTCTTCTACAGAGGACTTCAAATTGGAGGAAACTTCAGAGGTTTCGCTAAATCTGACTATCGGATATGATGATGAAGGAGGAGGTACTGTTCGAGAAGGAAAGGATCTGCAAACCTCAAATTTCATCGATTATTTTGGTCAAAGTAATCATACAGAAGAAGCAGAAAATGAGCATGATGCATCAGTGGATACCAAAGGGCCCCTGGAATCCAGCAATGAAGTCGGCCATCCTGCCACATACCCTGAATCTTCTTCATTGTCAGCGCAAGGCTCTGAGCCTCGAGTATTTTCCTGTAATTACTGCCAGAGAAAATTCTACAGCTCGCAGGCCTTAGGAGGCCATCAGAATGCGCACAAGCGAGAACGCACCTTGGCAAAGAGGGGGCAAAGAATTGGGGCTTTTCAACACAGGTACATAAGCATGGCATCCCTGCCTCTCCATGGCTCTACAGAATCAGCTACAGGCCAAATGAACCGATCCCTAGGCATAAAAGCACATTCATTGATTCACAAGCCACCTTATGCGGAGCCCAGTTTGCCTCTGAGCCACCATGGATGGTCAAGGCCTCCCATAGAACAGCACCCAGCGGTTGGGAAATATGTTATGGAAGATATGGGTAGCAGCAGGATGATAGTGGGTAACAGGGGTGGAGTAGCTAGATTTGAAAATAATAATTTTGGTGCAGGTAGAATTTTGGGAGCTAACCCTTTCCTCCACGAGGAACCAGCTAGTTTTTGTTGGCCAGGAAGCTTCAGACGGATGCAACAACAGAGTCAAGAAGGGGGGTCATATCATACTCAGAATCACGAGACTTCTTCAAATGCGTTTTATTTAAAACCGCAGGATGATATTTCCAAGCTGGATTTATCTCTTCGCCTTTGA___TTTGGAAAATTTTGGGTTTAGATGTCTAATATCATCTTTTGATGGTCATTCCAAATCCATATGGCACATTTTGGAACATTTTGGTCCAAGCTCTGGTCAGTATGCTAATTTTACACTGTAAATGCTTGAATAATTGGAATCCCGTCGTTTAATTTCTGCTTTCTTCGTGTATTATTTCCACAATGTCGTGTGAGTTTGCAGAGGTATATATACGGCCCTACTCTAATGTTATTAAATGCCTACATTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

sp_v1.1_unigene16813___MMNIMKNCSIDLEGSESYFSEESVISQQLSASNVSAGLESSLFSQQQHQPHYMFQVQENAPKSREKSSTEDFKLEETSEVSLNLTIGYDDEGGGTVREGKDLQTSNFIDYFGQSNHTEEAENEHDASVDTKGPLESSNEVGHPATYPESSSLSAQGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGAFQHRYISMASLPLHGSTESATGQMNRSLGIKAHSLIHKPPYAEPSLPLSHHGWSRPPIEQHPAVGKYVMEDMGSSRMIVGNRGGVARFENNNFGAGRILGANPFLHEEPASFCWPGSFRRMQQQSQEGGSYHTQNHETSSNAFYLKPQDDISKLDLSLRL
B8LP97_______________MMNIMKNCSIDLEGSESYFSEESVISQQLSASNVSAGLESSLFSQQQHQPHYMFQVQENAPKSREKSSAEDFKLEETSEVSLNLTIGYDGEGGGTVREGKDLQTSNFIDYFGQSSNTEEAEKEHDASVDTKGPLESSNEVGHPTTYPESSSLSAQGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGAFQHRYISMASLPLHGSTESATGQINRSLGIKAHSLIHKSPYAEPSLPLSHHGWSRPPIEQHPAVGKYVMEDMGSSRMIVGNRGGVARFENNNFGAGRVLGANPFLHEEPASFCWPGSFRRMQQQSQDGGSYHTQNHETSSNGFYLKPQDDISKLDLSLRL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1123		20		80	0.995493
1124	80		20		0.995493
1126		33	66		1.0
1128	66			16	0.988813
1129	66	16		16	0.988813
1132		16		83	0.994512
1133	66	16	16		0.988813
1134	16			83	0.994512
1135		16	66	16	0.988813
1136		16	83		0.994512
1137			83	16	0.994512
1138		16		83	0.994512
1139	66		16	16	0.988813
1142	83			16	0.994512
1145	83			16	0.994512
1146		33	66		1.0
1147	16		66	16	0.988813
1148	83	16			0.994512
1149	16			83	0.994512
1223	90	10			0.90298
1227	10	90			0.90298
1312		10		89	1.0
1548	12	87			0.992554
1549	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain