SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16810

Length: 1458 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16810

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	zinc finger (c3hc4-type ring finger) family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	75%
Blast2go	Protein of unknown function DUF1232	IPR010652	-	75%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	75%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7W8

Fln msg:

Fln protein: MPFIEGVGDEVVCVAVFAASVVLIFRSSLGYYSVNLGRLGGNVIRRCFQKTWNCISAFCSSNNMDSSRATASQQEGFLAGMDSPPENDCCSVCHDNFDLPCQANCAHWFCGDCILRVWHHSSALQPCKCPICRRPINLLIPCESATQRRDEPAVDSVLQNIEKYNRIFGGGSVGFLQRLRDTPLLLRRLLRELMDPQRALPLVFRARIVCFLALLAIYVFSPVDILPEGILGIVGLLDDLLVILVVFFHVATLYRSALFSRHGGRS*

Protein Length: 268

Fln nts: ATGGGGACATTCTACCGACAGAACCCAGGGGCCAGGCCCTATTCCACGGCCCCATTTATTCATTGGGCCAGTTGGTCTGCCTGATGGAATTATTGGTGGGAGAAATCCAAGATAATAAAAACAATTGGATAGTTAAAAATCGATATTAAATTGTAAGTCAAAATTTGAGATCGTGGCCTCGACTTTTCCTTCCATCGTTTTTAATACATACAAGACGGTGGCCAAGAGCATGAGGCTATTAAGGGTGTTTCAAGATCAATCTATACATACCCAATTTCCGCGGTTCTTATTCCTCAGCTTGGGCTTCTAACAGGAATTTTTGCTGCAAGAACGTGCCACAAAGTTTGAAGGGACAATTGCAGGTTGGACTC_-_ATGCCATTCATTGAAGGGGTTGGAGATGAGGTGGTTTGTGTGGCTGTATTTGCTGCATCAGTAGTATTAATTTTTAGAAGTTCTCTTGGGTATTATTCTGTGAATCTTGGTAGGCTGGGAGGGAATGTGATCCGAAGGTGTTTTCAAAAGACATGGAATTGTATCAGTGCATTTTGTTCGTCAAATAATATGGACTCATCTAGGGCTACTGCATCACAGCAGGAAGGGTTTCTTGCGGGAATGGATTCTCCCCCAGAAAATGACTGTTGTTCGGTCTGTCATGACAATTTTGACTTGCCTTGTCAGGCAAACTGTGCTCATTGGTTTTGTGGAGATTGTATACTTCGTGTTTGGCATCATAGCTCTGCTCTGCAGCCTTGCAAGTGCCCAATTTGTCGGCGACCTATAAATCTCTTGATACCATGTGAGTCGGCAACTCAACGACGTGATGAGCCTGCGGTGGATTCTGTTCTTCAAAATATTGAGAAATATAACCGTATATTTGGTGGAGGCTCTGTTGGCTTTTTGCAGAGGCTTCGGGACACACCACTTCTACTTCGCAGATTATTAAGGGAGTTGATGGATCCTCAGAGGGCTCTTCCTCTCGTGTTTAGGGCCCGCATTGTTTGCTTCTTGGCATTGCTAGCAATCTATGTGTTCAGTCCTGTGGATATTCTTCCAGAAGGGATCCTAGGCATTGTAGGTCTACTGGATGACCTTTTGGTAATACTTGTTGTGTTTTTCCATGTGGCTACATTGTATCGTTCAGCTCTTTTTAGTCGACATGGTGGCCGATCATGA___TAGCTATGGATTTTTGAGGACACATTTCATTCGTTCTATTGGCTTTGACTCGTAGATTTGTTAAGAATTTTGAGATCTCATGGACGTTTCGTTGTTGGCCCTATAATGTAAATCCTCTTTATTTTCTCAGAAAAAAGAATGTATTATGTATTGAGCATATCTATTCCATGAAAATGTTGCCTATATTCCATATTTTTATATAGGTTGTTGCATCTCTTTTATACATGATAAGTGCCAACAATTAGAGTCAGAAATTTCTAAGTTTTCATACATAAGAGAGAACTCT

Fln Alignment:

sp_v1.1_unigene16810___MPFIEGVGDEXXXXXXXXXXXXLIFRSSLGYYSVNLGRLGGNVIRRCFQKTWNCISAFCSSNNMDSSRATASQQEGFLAGMDSPPENDCCSVCHDNFDLPCQANCAHWFCGDCILRVWHHSSALQPCKCPICRRPINLLIPCESATQRRDEPAVDSVLQNIEKYNRIFGGGSVGFXXXXXXXXXXXXXXXXXXMDPQRALPLVFRARIVCFLALLAIYVFSPVDILPEXXXXXXXXXXXXXXXXXXFFHVATLYRSALFSRHGGRS
D5A7W8_______________MPIIEGVGDEVVCVAVFAASVVLIFRTSLGHYSVSLGRLGANVIRRCFQRTWNGVSALCSSNNMDSSRATSTEQEGFLMRMDSPPENDCCSICHDNFDLPCQANCAHWFCGDCILRVWHHSSALQPCKCPICRRPINLLIPCESATRRRDGPEVDSVLQNIEKYNRIFGGGSVGFFQRLRDTPLLLRRLLRELMDPQRALPLVFRARIVCFLALLAIYVFSPVDILPEGILGIVGLLDDLLVVLVVFFHVATLYRSALFSRHGGRS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
492		62	37		1.0
803		11		88	0.923564
830		20	80		0.999996
884			87	12	0.992554
1269	23		76		1.0
1271	21			78	1.0
1279	21	78			1.0
1347		44		55	1.0
1352	77			22	0.999999
1359		77		22	0.999999
1362	12			87	0.992554
1364			12	87	0.992554
1378	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain