SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16802

Length: 1511 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16802 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab-2-B n=11 Tax=Poaceae RepID=RAB2B_MAIZE	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	gtp-binding rab2a like protein	-	-	91%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	91%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	91%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	91%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	91%

Source	GOs	Term	Type	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	91%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	91%
Blast2go	protein transport	GO:0015031	Biological Process	91%
Blast2go	GTP binding	GO:0005525	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	GTPase activity	GO:0003924	Molecular Function	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	91%
Blast2go	Ran GTPase	IPR002041	-	91%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	91%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	91%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	91%
Blast2go	Small GTP-binding protein domain	IPR005225	-	91%
Blast2go	Ras	IPR013753	-	91%
Blast2go	Small GTPase	IPR020851	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU85

Fln msg:

Fln protein: MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANANMTIMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASMIYQKIQEGVFDVSNESYGIKVGYGGVSGAAGGAGRDASTSQSGGCCG*

Protein Length: 215

Fln nts: ATGGGGGCAACGAAATACATTACTAAAAGTAAAGCCGAATGGATGTCGCCTTCCAGAAGCAAAGTTTGATCTGTGGCCATAAGGAATCCCCCCTTTCCATCATTGCAACTTATTTAGGAAATATGTTGATAAAACCCCAGTTATACGATGTATATGTAACACATCACCGGATCTATAAAGAAATTGTTGAAGATACACCCAAGGGTTTGGAGTTTATATCACCTCAAACTTGTTTTATTTTGGATCTCTCTTATAGCCTGATCAGATCTCTAGGTTAACAGCTTTTTGAACTTTGTGGGTATTGATATTGAAGCCCTTTATAGCCGTGGAAGGAAGTATAATTCTGTGATCTGTGTGTTCACATTTCTCTATATTTCCTTTGAAGGGATTGGACCCAGGGCCTTGCAGAAGTCTTTGATTGATCTGGAAG_-_ATGTCTTATGCTTATCTCTTCAAGTACATAATTATCGGAGATACAGGGGTGGGTAAATCATGTCTTCTCCTCCAGTTCACTGATAAGAGATTCCAGCCTGTCCACGACTTGACAATTGGTGTGGAGTTTGGTGCTCGCATGATTACCATTGATAACAAACCAATAAAACTTCAAATCTGGGACACGGCTGGACAGGAGTCATTTCGATCCATCACAAGATCTTATTACAGAGGAGCAGCTGGAGCGTTACTGGTTTATGACATCACAAGGAGAGAAACCTTCAATCATCTCGCAAACTGGCTAGAGGATGCTCGCCAACATGCAAATGCAAATATGACGATAATGCTTATAGGGAACAAGTGTGATCTTTCTCACAGGAGAGCGGTGAGCACAGAGGAGGGTGAGCAGTTTGCAAAAGAACATGGTCTGATATTTATGGAAGCTTCAGCAAAAACTGCTCAAAATGTTGAGGAGGCATTTATAAGCACCGCTTCAATGATATATCAGAAAATTCAGGAAGGTGTCTTTGATGTGTCGAACGAGTCATATGGTATCAAAGTTGGATATGGAGGTGTCTCTGGTGCAGCTGGTGGTGCAGGCAGAGATGCTTCTACATCTCAAAGTGGAGGCTGTTGTGGTTAA___GTATTCGAGATAGAAACATTCCAGATCTAGACAGTTCCCTTCTATTGATTGCAGGCTTCAAAGCCAGCTTTGTTTATGAGATTCGTATCTCAAGGCATAAGTTATGAAATTGTACAGTGGAGCATCTGCAGTTAGACTAAACAGTTGGTGGGGAAGTATTAAGATTTCCGCAGCTGTCTAATTGATACCTTGATCTGCAGTCATTATTTATGTGCAAAATCATTAGGGTTGTGGATGAGCCAGTATTTGGCATATCATCTGTATATGTTCTTAATGTACATTTTAACAGATGCTAGGGGTATAAATCTTGGATATCCTGTCTTCTGTGCATCTCACTGGCTTTATTTGTTCTGAAGCTTTGCTAATTGTTTCTTTTTTCCCCTTACTGGTGCTGCAATATTTTCATTTATCTGATGGACATTCATTGGTTTTTGTCTAG

Fln Alignment:

sp_v1.1_unigene16802___MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANANMTIMLIGNKCDLSHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTASMIYQKIQEGVFDVSNESYGIKVXXXXXXXXXXXXGRDASTSQSGGCC
A9NU85_______________MSYAYLFKYIVIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIGNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHANSNMTIMLIGNKCDLDHRRAVSTEEGAQFAKEHGLVFMETSAKTAQNVEEAFINTAAKIYQKIEEGIFDVSNETSGIKVGYGGGAGTAGSVRNDYTAPQSSGCC

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
1039	5			94	0.998578
1040	94		5		0.998578
1042		94	5		0.998578
1043	5			94	0.998578
1045	5	94			0.998578
1047	94	5			0.998578
1048		5		94	0.998578
1051			5	95	0.997749
1054		5		95	0.997749
1059			5	94	0.997984
1115	6			93	0.99903
1116	6		93		0.999153
1122	93		6		0.999153
1124		6		93	0.999153
1125	3	84	3		0.999999
1128		14		85	1.0
1130		85		14	1.0
1131	85	7	7		0.996721
1132	92		7		0.999532
1133	92		7		0.999532
1134	7		85	7	0.996721
1136	85		7	7	0.996721
1140	92	7			0.999602
1142	92			7	0.999602
1143		7	88	3	0.998862
1145	7		92		0.999602
1146	88	7		3	0.998862
1150			88	11	1.0
1152	3	7	88		0.998862
1153	81	3	3	11	1.0
1154	92			7	0.999602
1155		92		7	0.999602
1157		87	3	6	0.992016
1158	90	6			0.997073
1234			15	84	1.0
1236	84		15		1.0
1239	10	89			0.999919
1240			11	77	0.999842
1241	88	11			0.999937
1242		11	88		0.999937
1244	11		88		0.999937
1245	88		11		0.999937
1248		11		88	0.999937
1249		11	88		0.999937
1251		11		77	0.999842
1269		76		23	1.0
1270		76	23		1.0
1272	76		23		1.0
1273	76			23	1.0
1274	76		23		1.0
1275	23			76	1.0
1276	66	25			1.0
1278	75		25		1.0
1279	75	25			1.0
1284			25	75	1.0
1286		25		75	1.0
1287	25		75		1.0
1288	75	25			1.0
1290	25		75		1.0
1291		25		75	1.0
1296		11		88	0.923564
1297	88	11			0.923564
1298	88	11			0.923564
1304	87		12		0.992554
1306	87		12		0.992554
1307		87		12	0.992554
1308		87	12		0.992554
1309	12	87			0.992554
1310		12		87	0.992554
1311	12			87	0.992554
1313		12	87		0.992554
1314		12	87		0.992554
1315	12			87	0.992554
1316	12		87		0.992554
1317			12	87	0.992554
1318	87		12		0.992554
1322	12			87	0.992554
1324	87		12		0.992554
1327	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain