SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16793

Length: 1332 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16793

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nuclease PA3, putative (EC:3.1.30.1)	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	bifunctional nuclease	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	DNA catabolic process	GO:0006308	Biological Process	74%
Blast2go	single-stranded DNA specific endodeoxyribonuclease activity	GO:0000014	Molecular Function	74%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	74%
Blast2go	T/G mismatch-specific endonuclease activity	GO:0043765	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	S1/P1 nuclease	IPR003154	-	0.0	74%
Blast2go	Phospholipase C/P1 nuclease domain	IPR008947	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP38

Fln msg:

Fln protein: MGWFGCSMLVGIGMEILILLLRVGIAPHGVEAWGNEGHYSICKIAEPLLSEEASIAVKKLLPEDAEGDLASLCSWADHMRFHYPWSRPLHFIDTQDNKCSYVYSRDCHNAEGEIGMCLEGAIKNYTSQLETYGSRLDSEKYNLTEALLFLSHFIGDVHQPLHVGFSTDEGGNTIILHWYRQKSNLHHIWDTLMIETAMKDFYDDDLEVMISSIQRNITDSWSDEVPTWEKCNGHDLACPKVYADESIILACKWAYKDAEANSVLEDDYFLSRLPIVQTQLAKAGVRLAATLNRLFNSKEGYNRKSEL*

Protein Length: 309

Fln nts: ATGGGACCATTGATGGATTGGATGCCGAAACTTCACGCAATGCAGTGCTGTGTACGAGAATACTTACTTGCGCTAAACGGATTCTTCACCTTCACATTTTCTGCACATTATATAAAGATGAAGCATGCTGTTACTGTTTTGTTGAACAGAGTCGGCGTTTCCTGTGTGAATGTTGCAGTAGCTACGGGATCAACAGGTTGCAACGTAAAATATTTTGGGAGAGTTACAGAGCATTGGAGAGGTTTTGGTGATA_-_ATGGGTTGGTTTGGGTGTTCAATGTTGGTTGGAATAGGAATGGAGATATTGATCCTCCTCCTCCGTGTTGGTATCGCTCCTCATGGTGTGGAAGCTTGGGGCAATGAAGGACACTATTCGATTTGTAAGATAGCTGAGCCACTCCTAAGTGAAGAAGCATCAATAGCAGTGAAAAAATTGCTCCCTGAGGATGCAGAGGGTGATCTTGCTTCTCTTTGTTCGTGGGCTGATCATATGCGATTCCACTATCCCTGGTCACGTCCATTACACTTCATTGACACGCAAGACAATAAGTGTTCTTATGTTTATTCCAGGGACTGCCATAATGCCGAAGGAGAAATAGGCATGTGCCTTGAAGGTGCCATAAAAAATTACACTTCTCAGCTTGAAACTTATGGCAGCAGACTCGACAGTGAAAAATATAATTTAACAGAAGCTTTACTATTTCTCTCTCATTTTATAGGAGATGTCCATCAGCCTCTACATGTGGGATTCAGTACAGATGAAGGTGGAAACACAATCATATTACACTGGTACAGGCAAAAGAGTAATTTGCATCATATATGGGATACACTGATGATCGAGACAGCAATGAAAGATTTTTATGATGATGACCTTGAGGTTATGATCTCATCAATTCAGAGAAATATTACTGATAGCTGGTCTGATGAAGTACCTACATGGGAGAAATGCAATGGGCATGATCTAGCCTGCCCCAAAGTGTATGCAGATGAAAGTATCATTCTTGCTTGCAAGTGGGCTTACAAAGACGCTGAAGCAAACAGTGTTCTAGAAGATGACTACTTCCTCTCTCGCTTGCCGATTGTTCAGACGCAACTTGCAAAAGCAGGTGTCAGGTTGGCTGCAACACTCAACCGATTATTCAATTCAAAAGAAGGCTACAATCGGAAATCAGAACTCTAG___AAAGAAAAGTGATGGGTTGCTTGCAACAATAGTATTGTAATCTATATTTAGATCAGAAACAGTGCTTGCGCCACTGAAAACAATAAGCGCTGTCACAAAATCTTGATTGTTTTAAATCAATTGTAGCTTAACCCAGAGGAGCATTGGTATAAAGG

Fln Alignment:

sp_v1.1_unigene16793___EAWGNEGHYSICKIAEPLLSEEASIAVKKLLPEDAEGDLASLCSWADHMRFHYPWSRPLHFIDTQDNKCSYVYSRDCHNAEGEIGMCLEGAIKNYTSQLETYGSRLDSEKYNLTEALLFLSHFIGDVHQPLHVGFSTDEGGNTIILHWYRQKSNLHHIWDTLMIETAMKDFYDDDLEVMISSIQRNITDSWSDEVPTWEKCNGHDLACPKVYADESIILACKWAYKDAEANSVLEDDYFLSRLPIVQTQLAKAGVRLAATLNRLFNS
B8LP38_______________ESWGKEGHYATCKIAQPLLSEEASAAVKKLLPDYAEGDLASLCSWADQVRFRYRWASPLHFIDTPDNKCTYIYSRDCHNPEGEEGMCVDGAIKNYTSQLGNYGCRATGANYNLTEALLFLSHFMGDIHQPLHVGFSTDEGGNTIKLHWYGRQNNLHHIWDTLIIETAMKDNYNNDLEEMIAAIQKNVTDSWSDEVPTWEKCSTNALACPKLYADESINLACNWAYKDADQNSVLEDDYFFSRLPIVETQLAKGGVRLAATLNRIFNS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
678	90		10		0.90298
680		10		90	0.90298
681	10			90	0.90298
682		10		90	0.90298
689	66		33		1.0
957			80	20	0.995493
1019		78		21	1.0
1064		55	44		1.0
1075		55		44	1.0
1083		62	37		1.0
1086	87			12	0.992554
1087	25	62		12	1.0
1088	37		62		1.0
1110	83	16			0.994512
1270	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
306	317	TCC TCC TCC TCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain