SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16792

Length: 1958 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16792
CGTCGTACCTTGGCGTCGTGACCTTGGCTGTCACTCAGATCACTAGGGTTCTGGCAGTTGGGTGGTTTTGATAAAATTGTGGCTCGACTGTGATAGGCGAAGGCCAGTAGCAGGCATTTCCGGCAGACTGAAGGAGTTTCTACTCTCAGGTGGTTAAAGGCAAGTTTTTATTTTTGTTTGTTTTCTGTGTGATTTCATCTTTGAGGAATTAGTGAATGTGGTTTTCGTTGATGCATCCAATTGGCGTGGACGATATAGTTTCCTGTGAGAAAATTGTAACTGCGAATTTGCTGGTGTGGGCTGTAGATAATTAGAGAATATTGAGAAATACGGTTGTGTTCGTCAAATGGTAACTCAACCTGGTTTGTGGGTTATGGAAAATTGAGTTTTGTTGTGAAGAAATTGTTCACAAATTGGTATTGATAAATGGGGTTTCAGAATAGTTGGGAAGATGGTATATTGACGGAAGAGATTAGCTAGGGGGTTTCTGTTAACTTTTGGAAGGGTTTGGTATCAGGGTTTTTGTTGTTGTGAGGAGATTCTTGGGGAGATTTCTGAAATTGGTATTGGTTCTCCTTGTCTGAAATAGTGTTGTGAAATTGGTATCGGTTCTCCTTGTCTGAAATAGTGTTGTGAAGAGGAAGAGGGTATATAGAGGCAAAGGCAAGCTTTCTGTTTCAGTGGGAAGATGAGTTCAAGGGATAGAAAAGCGAGGGTGGGTTTGAAGCTGCCAATCCCAGCTCGGGAAGACGCATTTGCTAAGCCAATGCCATTGCCGCTTCCACTGCCGAAGCCCCCTAACATGAATGGTGCCTGCAAGTTGCCCTGTGTTCCTCTTGAAGAAGTTACACTGGAAGATCTCCAGAAGATTTCAACTTTGGGGTGTGGGAGCAGTGGTAAGGTCTACAAGGTTAAGCATGCCAAGACTGGGAAAATTTATGCCCTCAAAATCATTCAGGAAAAGCACGAGCTTGCTGTCCGAAAGCAAATAATGAGGGAAATGGAGATTCTCCGAAGGGCGAATTCTCCACACATCGTGCAGTGTTATGGTATATTCGATCGAGGAGGAGAGATCTCTTTTGTGCTGGAATACATGGACGGTGGAACCCTTGCGCAGGTTCTTCAAGCCCACAAGAAAATCCCAGAACACTATTTGGCTGAGGTTGCCAGACAGGTGCTGAAGGGCTTGCATTACCTGCACCAGAACAAAATTGTTCACCGTGATATAAAGCCCTCCAATTTGCTGATCAACAAGAGAAGAGAAGTGAAGATTGCCGATTTCGGTGTCAGCACTGTGTTGGCTCACACTTTGGCCCAGTGTAATTCCTTCGTGGGCACTTGTGCTTATATGAGTCCTGAAAGGTTCGATCCTGATGGGTACGGTGGAAAGTATGATGGATGCTCTGCAGATATATGGAGCTTGGGATTATCTTTGTTGGAATGTGCGCTTGGAAGGTTCCCTTGTTTGTCTCCGGGGCAGAGGCCTGATTGGCCTACTTTAATGGTGGCCATCTGTTTGGGCGACCCTCCATCCCCGCCACCTGATGCATCACCAGAGTTTCAGAGTTTTATCAGATGTTGCCTTCAAAAGGATGCATTACTTCGCCATACTGCACATCGGCTGCTTTCGCATCCTTTTTTGAAGAAGTATGAACAGCAATCTTGTGACCTGGCTCCCCTCCTGCAGTCTTTACACCTGTAGAATTTTGAATTCCTTTTTGTATTTTGAATATTGTACCTGAGAGCATTCATTGACTTGTAATGAATGTACACTCTCTTGGTCTCTGGAACTCTATTTTGTAAATCATTTTGCAATGCAACTGCAGTCTTCTTTACAGCACTTTGTCATCATGTTCGTTTTGTTTTCCAATGGTAAATTCAAATGTATTCCTTGGAAATCCAGTCATTTTTAATGGCAAAGCTATTCTCATTTCTAATTTATGGCATATGCACTCCTG

Ace file of the UniGene sp_v1.1_unigene16792

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MKK9; MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	75%
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	75%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	75%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	75%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	75%
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	75%
Blast2go	camalexin biosynthetic process	GO:0010120	Biological Process	75%
Blast2go	response to salt stress	GO:0009651	Biological Process	75%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	protein kinase activator activity	GO:0030295	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD68

Fln msg:

Fln protein: MSSRDRKARVGLKLPIPAREDAFAKPMPLPLPLPKPPNMNGACKLPCVPLEEVTLEDLQKISTLGCGSSGKVYKVKHAKTGKIYALKIIQEKHELAVRKQIMREMEILRRANSPHIVQCYGIFDRGGEISFVLEYMDGGTLAQVLQAHKKIPEHYLAEVARQVLKGLHYLHQNKIVHRDIKPSNLLINKRREVKIADFGVSTVLAHTLAQCNSFVGTCAYMSPERFDPDGYGGKYDGCSADIWSLGLSLLECALGRFPCLSPGQRPDWPTLMVAICLGDPPSPPPDASPEFQSFIRCCLQKDALLRHTAHRLLSHPFLKKYEQQSCDLAPLLQSLHL*

Protein Length: 339

Fln nts: CGTCGTACCTTGGCGTCGTGACCTTGGCTGTCACTCAGATCACTAGGGTTCTGGCAGTTGGGTGGTTTTGATAAAATTGTGGCTCGACTGTGATAGGCGAAGGCCAGTAGCAGGCATTTCCGGCAGACTGAAGGAGTTTCTACTCTCAGGTGGTTAAAGGCAAGTTTTTATTTTTGTTTGTTTTCTGTGTGATTTCATCTTTGAGGAATTAGTGAATGTGGTTTTCGTTGATGCATCCAATTGGCGTGGACGATATAGTTTCCTGTGAGAAAATTGTAACTGCGAATTTGCTGGTGTGGGCTGTAGATAATTAGAGAATATTGAGAAATACGGTTGTGTTCGTCAAATGGTAACTCAACCTGGTTTGTGGGTTATGGAAAATTGAGTTTTGTTGTGAAGAAATTGTTCACAAATTGGTATTGATAAATGGGGTTTCAGAATAGTTGGGAAGATGGTATATTGACGGAAGAGATTAGCTAGGGGGTTTCTGTTAACTTTTGGAAGGGTTTGGTATCAGGGTTTTTGTTGTTGTGAGGAGATTCTTGGGGAGATTTCTGAAATTGGTATTGGTTCTCCTTGTCTGAAATAGTGTTGTGAAATTGGTATCGGTTCTCCTTGTCTGAAATAGTGTTGTGAAGAGGAAGAGGGTATATAGAGGCAAAGGCAAGCTTTCTGTTTCAGTGGGAAG_-_ATGAGTTCAAGGGATAGAAAAGCGAGGGTGGGTTTGAAGCTGCCAATCCCAGCTCGGGAAGACGCATTTGCTAAGCCAATGCCATTGCCGCTTCCACTGCCGAAGCCCCCTAACATGAATGGTGCCTGCAAGTTGCCCTGTGTTCCTCTTGAAGAAGTTACACTGGAAGATCTCCAGAAGATTTCAACTTTGGGGTGTGGGAGCAGTGGTAAGGTCTACAAGGTTAAGCATGCCAAGACTGGGAAAATTTATGCCCTCAAAATCATTCAGGAAAAGCACGAGCTTGCTGTCCGAAAGCAAATAATGAGGGAAATGGAGATTCTCCGAAGGGCGAATTCTCCACACATCGTGCAGTGTTATGGTATATTCGATCGAGGAGGAGAGATCTCTTTTGTGCTGGAATACATGGACGGTGGAACCCTTGCGCAGGTTCTTCAAGCCCACAAGAAAATCCCAGAACACTATTTGGCTGAGGTTGCCAGACAGGTGCTGAAGGGCTTGCATTACCTGCACCAGAACAAAATTGTTCACCGTGATATAAAGCCCTCCAATTTGCTGATCAACAAGAGAAGAGAAGTGAAGATTGCCGATTTCGGTGTCAGCACTGTGTTGGCTCACACTTTGGCCCAGTGTAATTCCTTCGTGGGCACTTGTGCTTATATGAGTCCTGAAAGGTTCGATCCTGATGGGTACGGTGGAAAGTATGATGGATGCTCTGCAGATATATGGAGCTTGGGATTATCTTTGTTGGAATGTGCGCTTGGAAGGTTCCCTTGTTTGTCTCCGGGGCAGAGGCCTGATTGGCCTACTTTAATGGTGGCCATCTGTTTGGGCGACCCTCCATCCCCGCCACCTGATGCATCACCAGAGTTTCAGAGTTTTATCAGATGTTGCCTTCAAAAGGATGCATTACTTCGCCATACTGCACATCGGCTGCTTTCGCATCCTTTTTTGAAGAAGTATGAACAGCAATCTTGTGACCTGGCTCCCCTCCTGCAGTCTTTACACCTGTAG___AATTTTGAATTCCTTTTTGTATTTTGAATATTGTACCTGAGAGCATTCATTGACTTGTAATGAATGTACACTCTCTTGGTCTCTGGAACTCTATTTTGTAAATCATTTTGCAATGCAACTGCAGTCTTCTTTACAGCACTTTGTCATCATGTTCGTTTTGTTTTCCAATGGTAAATTCAAATGTATTCCTTGGAAATCCAGTCATTTTTAATGGCAAAGCTATTCTCATTTCTAATTTATGGCATATGCACTCCTG

Fln Alignment:

sp_v1.1_unigene16792___MSSRDRKARVGLKLPIPAREDAFAXXXXXXXXXXXXXXXXGACKLPCVPLEEVTLEDLQKISTLGCGSSGKVYKVKHAKTGKIYALKIIQEKHELAVRKQIMREMEILRRANSPHIVQCYGIFDRGGEISFVLEYMDGGTLAQVLQAHKKIPEHYLAEVARQVLKGLHYLHQNKIVHRDIKPSNLLINKRREVKIADFGVSTVLAHTLAQCNSFVGTCAYMSPERFDPDGYGGKYDGCSADIWSLGLSLLECALGRFPCLSPGQRPDWPTLMVAICLGXXXXXXXXXXXEFQSFIRCCLQKDALLRHTAHRLLSHPFLKKYEQQSCDLAPLLQSLHL
D5AD68_______________MSSRERKAKVGLKLPIPVREDAFSKPMPLPLPLPKPPNMNGACKLPCVPLEEVTLEDLQKISTLGCGSSGKVYKVKHVKTGKIYALKIIQEKHELAVRKQIMREMEILRRANSPHIVQCYGIFDRGGEISFVLEYMDGGTLAQVLQAHKKIPEHYLAEVARQVLKGLLYLHQNKIVHRDIKPSNLLINKRREVKIADFGVSTVLAHTLAQCNSFVGTCAYMSPERFDPDGYGGKYDGCSADIWSLGLSLLECALGRFPCLSPGQRPDWPTLMVAICLGDPPSPPPDASPEFQSFIRCCLQKDALLRHTAHGLLLHPFLKKYEQRSCDLSPLLQSLHL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
150		11	88		0.923564
153		11	88		0.923564
156	12			87	0.992554
157	25	12			1.0
158	87	12			0.992554
159	87			12	0.992554
160	87			12	0.992554
165	87			12	0.992554
168	16			83	0.994512
169		16		83	0.994512
171		16		83	0.994512
334	25		75		0.996473
1183	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain