SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16791

Length: 1849 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16791

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Late embryogenesis abundant protein Lea14-A, putative	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	late embryogenesis abundant protein lea14-	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to desiccation	GO:0009269	Biological Process	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	89%
Blast2go	Immunoglobulin-like fold	IPR013783	-	89%
Blast2go	Water stress and hypersensitive response domain	IPR013990	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK2

Fln msg:

Fln protein: MSSSEEIGKQKDKEETSVTERGLKGDKKDGDKDEDKGGFIEKVKDFIHDIGEKIEEAIGFGKPTADVTGIHIPSINLKKAEIVVDVRINNPNPVPIPLVDIDYLVESDGRKLVSGLIPDAGTIHAHGSETLKIPMTIIYDDIKDTYDDIKPGSIIPYKIKVGLIADVPVFGKITLPLEKEGEIPVPYKPDVDLEKVEFDSFSFEETSATLHLKLENKNDFDLGLNALEYEVWLAEVSIVSAKLDKSAKLDKNGISYIELPFSFRPKDFGSALWDMIRGKGAGYGMKGNLDVDSPFGPMKLPFNKEGGRTRLKKKNKEESDDDED*

Protein Length: 326

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTATTTATACGTCGTGACCTTGGCTGTCACTCAGGAAGGCGAAGCGATCCGAATTGCTGTTCATCTGATCATTTGTTTTTAGCTCTAAATTGCTGTTTTAGCGCAAAAATTAGATCTGCGTTGCGTTGGAGGGTTTTGTGGGATAGATTCTTTGGAAAATTAGATCAGAGGTTGTAATTTGGTGATCTGGTTAGCTGTCTGGTAGAAAAATCAGTTGTATTTCTCGGTGGGTATTGGAGAATCGACATAAAATAGTTTTGTCGCGTTGACAGTGGCAAAGCGTACATAAGGAAGCAATCTACAGTTTCAGCCGGGGTTTTGAAAAGTGAGCATTGAAAGAATTTTCAGTTCTGGTGCTGGATTTACCTCCGGGAACTCCTATTAAGGTGCGTCAAGGATTATTGAAAAAGTGGTTTTAGGGTTTTAAAGGGGTTGTTATCATTAAAATAGATCTAACTAGTGTCTAATTTGTGAAGACA_-_ATGTCATCGTCTGAGGAGATCGGGAAGCAGAAGGACAAAGAAGAGACATCTGTGACCGAGAGAGGTCTGAAAGGAGACAAAAAGGATGGAGATAAGGACGAGGATAAGGGTGGATTCATTGAGAAGGTGAAGGACTTCATCCATGACATAGGAGAGAAGATTGAGGAAGCTATTGGTTTTGGAAAACCGACGGCAGATGTCACAGGAATCCACATTCCATCTATCAATCTGAAGAAGGCTGAAATTGTTGTCGATGTGCGTATAAATAATCCCAACCCTGTTCCGATCCCTTTGGTGGACATTGATTATCTAGTAGAGAGCGATGGCAGGAAGCTTGTCTCTGGATTGATCCCTGATGCGGGCACAATTCATGCCCATGGGTCTGAAACTCTGAAGATCCCCATGACAATAATCTACGATGATATCAAGGACACTTATGATGATATCAAGCCCGGAAGCATTATTCCTTACAAAATTAAGGTTGGCCTTATTGCAGACGTGCCTGTCTTTGGCAAGATAACGTTGCCACTGGAAAAGGAGGGAGAGATTCCCGTGCCTTACAAACCTGATGTTGATCTGGAGAAGGTGGAATTCGATAGTTTCTCCTTCGAAGAAACTTCAGCAACATTGCATTTGAAACTGGAGAATAAAAATGATTTTGATCTCGGCTTGAATGCGCTGGAATATGAGGTCTGGCTTGCTGAGGTGAGCATTGTAAGTGCGAAGCTGGATAAGTCCGCGAAGCTTGATAAGAATGGAATCAGCTACATTGAGTTGCCTTTTTCCTTTAGGCCAAAGGATTTTGGATCTGCTCTCTGGGACATGATTAGAGGCAAGGGTGCTGGATATGGTATGAAGGGAAACTTGGATGTTGACTCTCCATTTGGACCCATGAAATTGCCCTTCAACAAGGAAGGTGGCAGAACCCGCCTCAAGAAGAAGAACAAAGAGGAAAGCGATGACGATGAGGATTGA___GTAAACTCCTTTGGAATGCTGTAACAAGATAGATAGGACTCTACTTAGCTCGGACAACTGCAGTATTTTGCACTGTTTCATGGATCTTCTTTACTGAAACCTAGATAGTGAATATTATCTGTTAAAGGTGTGGAAATTTTTGTGCCATTTTGGTCCATTTAACATCTTCCAAATATTGTAGACCATGTAGGCTTTTTGCAGTAAACGTTTTACATGGATCTTATTCTTAGAATATAGAGGATTGTTATTTAGTTTGGGTTATCTTCAACAGATTATAGACCAAGTAGGCATTTGCAAGTCAACGATTTATATGGATTTTATAGTAAGAAAATAAAGAGAAGTGTTGTGCTGTTTTTATAAATTTGCTTAT

Fln Alignment:

sp_v1.1_unigene16791___MSSSEEIGKQKDKEETSVTERXXXXXXXXXXXXXXXXXFIEKVKDFIHDIGEKIEEAIGFGKPTADVTGIHIPSINLKKAEXXXXXXXXXXXXXXXXXXXXXYLVESDGRKLVSGLIPDAGTIHAHGSETLKIPMXXXXXXXXXXXXXXXPGSIIPYKIKVGLIADVPVFGKITLPLEKEGEIPVPYKPDVDLEKVEFDSFSFEETSATLHLKLENKNDFDLGLNALEYEVWLAEVSIVSAKLDKSAKLDKNGISYIELPFSFRPKDFGSALWDMIRGKGAGYGMKGNLDVDSPFGPMKLPFNKEGGRTRL
A9NWK2_______________MSSSEEMEKQKEKEETSVIERGLKKDKKDEDEDEEKGGFIDKVKDFIQNIGEKIEEAIGFGKPTADVSGIHIPSINLKKLEIVVDVLITNPNPVPIPLVDIDYLVESNGRKLVSGLIPDAGTIHAHGSETIKIPITIIYDDIKDTYDDIKPGSIIPYKIKVGLIADVPVFGKLTLPLEKEGEIPVPYKPDVDLDKVEFDSFSFEETSATLHMKLENKNDFDLGLNALEYEVWLSGVSIVNAKLSKSAKVEKNGISYIQLPVSFRPKDFGSALWDMIRGKGAGYAMKGNLDMDSPFGPMQLPFNKEGGSTRL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1305		8	91		0.999766
1539	94	5			0.999995
1648		55		44	1.0
1840		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain