SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16789

Length: 953 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI	-	-	5.0e-25	66%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h2a	-	-	8.34719e-25	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	8.34719e-25	95%
Blast2go	DNA binding	GO:0003677	Molecular Function	8.34719e-25	95%
Blast2go	nucleosome	GO:0000786	Cellular Component	8.34719e-25	95%
Blast2go	nucleus	GO:0005634	Cellular Component	8.34719e-25	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H2A	IPR002119	-	8.34719e-25	95%
Blast2go	Histone core	IPR007125	-	8.34719e-25	95%
Blast2go	Histone-fold	IPR009072	-	8.34719e-25	95%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
371	90		10		0.90298
385	87			12	0.992554
412		15	84		0.999986
421		84		15	0.999986
593	14			85	0.993533
594		83		16	0.994512
597	83		16		0.994512
605		12		87	0.992554
608			12	87	0.992554
610	87		12		0.992554
612		12		87	0.992554
614			87	12	0.992554
615		87	12		0.992554
616			12	87	0.992554
621	12		87		0.992554
622		12	87		0.992554
623			87	12	0.992554
625	12		87		0.992554
731		12		87	0.992554
843	42		57		1.0
868		50		50	1.0
914	60			40	1.0
938		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain