SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16779

Length: 862 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16779

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L31 n=5 Tax=Pinaceae RepID=RL31_PICMA	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein l31a	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	94%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	94%
Blast2go	ribosome	GO:0005840	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L31e	IPR000054	-	94%
Blast2go	Ribosomal protein L31e, conserved site	IPR020052	-	94%
Blast2go	Ribosomal protein L31e domain	IPR023621	-	94%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
531		80		20	0.996423
606		5		94	0.998744
807	60		40		1.0
817		11		88	0.923564
839	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain