SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16770

Length: 929 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16770 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L12, chloroplastic n=3 Tax=Spinacia oleracea RepID=RK12_SPIOL	-	-	7.0e-21	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	ribosomal protein l12	-	-	1.28057e-38	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	1.28057e-38	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	1.28057e-38	80%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.28057e-38	80%
Blast2go	RNA binding	GO:0003723	Molecular Function	1.28057e-38	80%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	1.28057e-38	80%
Blast2go	protein binding	GO:0005515	Molecular Function	1.28057e-38	80%
Blast2go	nucleoid	GO:0009295	Cellular Component	1.28057e-38	80%
Blast2go	plastid large ribosomal subunit	GO:0000311	Cellular Component	1.28057e-38	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	1.28057e-38	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.28057e-38	80%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
236		75	25		0.996473
436	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain