SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16758

Length: 1110 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16758 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine zipper-ef-hand containing transmembrane protein, putative	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	calcium-binding ef hand family protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	83%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMR6

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 310 - 149

Fln protein: MRQQLRDWLDLSLNHSVPSSLLILSRTFTMSGKLKPEEAVQATLSSLPDEVVDTVGVTALPSEDTVAERRRKLEFLEMQEELIKEEEENEEEQQARLRESPVSQEDIALQEMTVGTAGEAQELAKSKAIDKEEQLCKLSRALAVLASASSVSTERAEFLALVNKEIGLYNSMVDKKGEEGAEAAMKAYHASREQSDHATEVSVGSNVSSSLINRIDAMLHKLEKEIDDVDEKIGDRWRILDRDYDGKVTPEEVAAAALYLKDTLGHEPVQDLVSNLAKDKDGKILVEDIVKLGTRKDEDDISEEKHKQK*

Protein Length: 311

Fln nts: TGAACCGGAACTTAGGCAAGCTTGTCGAGATCGTGGAAAATTAGGTTTAATTTCCATTGAGGAA_-_ATGCGACAACAGCTTCGGGATTGGTTGGATCTATCTCTGAACCATTCTGTGCCTTCCTCCCTGCTTATTCTCTCTCGAACTTTCACCATGTCAGGAAAGTTGAAGCCAGAGGAGGCAGTTCAAGCCACACTTTCTTCCCTTCCAGATGAAGTAGTTGACACAGTAGGTGTCACTGCACTTCCCAGTGAAGATACTGTTGCAGAGCGTAGAAGGAAGCTGGAGTTCTTGGAAATGCAAGAAGAACTCATTAAGGAGGAGGAAGAGAATGAGGAAGAGCAGCAGGCACGGCTGAGGGAGAGTCCAGTCAGTCAAGAAGATATTGCTTTGCAGGAGATGACCGTTGGTACTGCTGGGGAGGCACAAGAGTTGGCAAAGTCTAAAGCAATTGATAAAGAAGAACAACTTTGCAAACTTAGTCGTGCTTTAGCTGTGCTAGCCTCAGCTTCTTCAGTTAGCACAGAGCGTGCAGAATTTTTGGCCCTTGTTAACAAAGAGATTGGACTATATAATAGCATGGTTGATAAAAAAGGGGAAGAAGGTGCTGAAGCTGCAATGAAGGCATATCATGCGTCAAGAGAGCAGAGTGATCATGCAACTGAAGTTTCTGTAGGAAGCAATGTTTCGTCTTCTCTGATAAATAGGATCGATGCCATGCTTCACAAGCTAGAAAAGGAAATTGATGATGTAGATGAAAAAATTGGTGACCGATGGCGAATATTGGACAGAGATTATGATGGAAAGGTAACTCCAGAGGAGGTAGCTGCGGCGGCTTTGTATCTCAAGGACACCTTAGGTCACGAACCAGTGCAGGATTTGGTCAGCAATTTGGCAAAGGATAAAGATGGAAAAATTCTTGTGGAGGATATTGTTAAGTTGGGGACTAGAAAAGATGAAGATGACATAAGTGAAGAAAAGCACAAGCAGAAATAGTTGCAACTTTATCAACGAGAAGCATCATAGTAAATGCTTCTAATTCACATATGGATTTCCCCGTTTCAACAAGGCAATTTTATTGTCATATGATACATAATGTTCTACAAGGTTTT

Fln Alignment:

sp_v1.1_unigene16758___EQSDHATEVSVGSNVSSSLINRIDAMLHKLEKEIDDVDEKIGDRWRILDRDYDGKVTPEEVAAAALYLKDTLGHEPVQDLVSNLAKDKDGKILVEDIVKL
A9NMR6_______________EIQDMINEVDTDGNGTIDFREFLDLMAHKI-KDLDS-DEELREAFKVFDKDQNGYISAAELRHVMINLGEKLTEEEVELMIKEADTDGDGQVNYEEFVRM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
688	16		83		0.994512
759		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain