SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16733

Length: 1532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16733

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	histone-lysine n-	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	65%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	SET domain	IPR001214	-	65%
Blast2go	SRA-YDG	IPR003105	-	65%
Blast2go	Pre-SET zinc-binding sub-group	IPR003606	-	65%
Blast2go	Pre-SET domain	IPR007728	-	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA49

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 458 - 332

Fln protein: MMLEKGLWLNRDRKIVGSVPGVQSGDHFFFRMELCILGLHGQVQAGIDYIGANNSEWNDPVAISIIASGGYEDDEDDGGETLVYTGQGGNSKLDKKQNDDQKLERGNLALERSKHHGVEVRVIRGIKDNASPSGKIYVYDGLYKVEDSWLDKGKSGYGVFKYRLERLPGQPELASNILKSAVKWKSNPSLRHGLINPDISSKRDNLPVYLVNDVDDSEGPKNFEYVSKVSYSNSVSKLLEPSEGCDCKGSCGFSDKCSCFQLNGRDMAYTQNGILVKWRPLIYECGEHCRCHQTCRNRVSQKGPKFHLEVFRKDNGGWGVRSWDPIPGGSFICEYVGEVLLDEEIDRQFEENQYVLNASRSQENSTDWGNISDILPEKKQDGSSAAPLELKFTINAKEMGNVARFINHSCSPNAFLQSVLSDHQDSRFPHIMLFSIEHIPPLTELTVDYGVTDMQTT*

Protein Length: 459

Fln nts: GTGGTGGTGGTGTGAAACGATCTGATTTAAAGGCAGGGACA_-_ATGATGTTAGAGAAAGGGTTGTGGCTTAATCGGGACAGAAAGATAGTAGGATCTGTTCCAGGAGTCCAATCTGGTGATCATTTTTTCTTTAGAATGGAGTTGTGTATACTTGGCTTGCATGGTCAGGTGCAGGCTGGAATAGATTATATTGGTGCAAACAACAGTGAGTGGAATGATCCAGTTGCAATCAGTATTATAGCATCTGGTGGGTATGAAGATGATGAAGATGATGGTGGAGAAACATTGGTTTACACAGGGCAGGGAGGAAATAGCAAGTTGGATAAGAAACAGAATGATGATCAGAAACTAGAAAGGGGGAATCTTGCCCTTGAGCGAAGCAAGCATCATGGAGTTGAAGTTAGAGTGATTCGAGGTATTAAGGACAATGCTAGTCCTTCTGGAAAGATTTATGTATATGATGGTCTCTACAAGGTTGAAGATTCATGGTTGGATAAAGGGAAGTCAGGATATGGTGTGTTCAAGTACAGGTTAGAGAGGTTACCGGGCCAGCCCGAGCTAGCATCTAATATACTGAAGTCTGCTGTCAAATGGAAGTCCAACCCATCTCTCAGGCATGGTCTCATTAATCCAGATATTTCGTCAAAGAGGGATAACTTACCTGTCTATCTTGTGAATGATGTTGACGATTCCGAAGGCCCAAAAAACTTTGAGTACGTTAGCAAAGTAAGCTATTCAAATTCTGTTTCCAAGCTTCTTGAGCCATCTGAAGGTTGTGATTGCAAGGGAAGCTGTGGTTTCAGTGACAAATGTTCATGTTTTCAACTGAATGGAAGAGATATGGCATATACTCAAAACGGGATTCTTGTTAAGTGGAGACCTTTAATCTATGAATGTGGTGAGCATTGCAGGTGTCATCAAACTTGCCGAAATAGAGTGTCTCAAAAAGGTCCAAAGTTCCATTTGGAAGTGTTTAGAAAAGATAATGGCGGATGGGGTGTGCGATCTTGGGACCCAATTCCAGGTGGTAGTTTTATTTGTGAATATGTTGGTGAAGTTTTGTTAGATGAGGAGATAGATCGACAGTTTGAGGAAAATCAGTACGTTCTAAATGCAAGCCGTTCCCAGGAAAATTCAACAGACTGGGGTAATATTTCTGATATCCTCCCTGAAAAGAAACAAGATGGTTCTAGTGCAGCTCCTCTTGAGTTGAAGTTTACTATAAATGCCAAGGAAATGGGGAATGTTGCTCGCTTCATCAATCACAGTTGTTCTCCTAATGCTTTCCTGCAAAGTGTCCTTTCTGACCATCAAGATTCTAGGTTTCCCCACATCATGCTTTTTTCGATAGAACATATTCCTCCGTTAACAGAATTGACAGTTGACTATGGAGTGACTGATATGCAGACCACATAGTGAGGACATTAACGAAAATAGGATTATGTGAAACTGGAAACATGCCTATTGATGTGGTTCAATATATTTTGAAGGAAATTTTATTAAAGATTATAGGAAATCATTTCAACTTCAGAG

Fln Alignment:

sp_v1.1_unigene16733___EGCDCKGSCGFSDKCSCFQLNGRDMAYTQNGILVKWR------PLIYECGEHCRCHQTCRNRVSQKGPKFHLEVFRKDNGGWGVRSWDPIPGGSFICEYVGEVLLDEEI-DRQFEENQYVLNASRS
D5AA49_______________EGCPC-------NKFRVYTEDGR-ISFTDGNCDTQFEGLNGGPPLVMECGPACRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVEARERQRHYDDAIVNKHNS

SSRs (tot: 1)

Start position	End position	Sequence	Length
1	12	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain