SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16731

Length: 517 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene16731
AGCCGTGGTAATAAGGAAGATTGCTGAAGTGGTCTCTGATTTCTATGGAGGACCTGCGTCTGAACAAAGTGCTGCAAAACATTTTCTGGATGAAAGCCCGTCAGCAGCAGATAACTTTGAATTTCAATTATTGGGGAAGATTAAAAATGGATTATGTCGACCACGGGCAATGTTATTTAAAGTCCTTGCAGATGCTGTAGGACTTAGAAGTAAGCTACTGGTGGGCCTACAGGTTTACGATAGGGTAATTCATCAGCCAGAACCTGACAAGCATATGTCATTGCTGGTTGGAATGAATTCTATAGAGCTACTGGTAGATGTTATGCGATCTCCTGGCCAGTTAATACCCTTCTCCACGAGAGCTCTTATGCTATTTCATTTCCCTGGAGGTGTAGAAAGTGATTCTGCCGACAACGATTCCTGTGATTCTCCTTTAGAACCAAGCAGTCCCATGTTTGATCTGTCAGACAAATATTGCAACGAAAGCCCAGAACTGGAAGATCACAGCTTCAAATTT

Ace file of the UniGene sp_v1.1_unigene16731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase, putative (EC:2.7.10.2)	-	-	3.0e-38	52%
FL-Next	sp=Serine/threonine-protein kinase CTR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	26%
Blast2go	protein	-	-	2.74683e-41	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	2.74683e-41	70%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.74683e-41	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.74683e-41	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q05609

Fln msg: Distance to subject end: 355 aas, your sequence is shorter than subject: 172 - 821

Fln protein: AVVIRKIAEVVSDFYGGPASEQSAAKHFLDESPSAADNFEFQLLGKIKNGLCRPRAMLFKVLADAVGLRSKLLVGLQVYDRVIHQPEPDKHMSLLVGMNSIELLVDVMRSPGQLIPFSTRALMLFHFPGGVESDSADNDSCDSPLEPSSPMFDLSDKYCNESPELEDHSFKF

Protein Length: 173

Fln nts: AGCCGTGGTAATAAGGAAGATTGCTGAAGTGGTCTCTGATTTCTATGGAGGACCTGCGTCTGAACAAAGTGCTGCAAAACATTTTCTGGATGAAAGCCCGTCAGCAGCAGATAACTTTGAATTTCAATTATTGGGGAAGATTAAAAATGGATTATGTCGACCACGGGCAATGTTATTTAAAGTCCTTGCAGATGCTGTAGGACTTAGAAGTAAGCTACTGGTGGGCCTACAGGTTTACGATAGGGTAATTCATCAGCCAGAACCTGACAAGCATATGTCATTGCTGGTTGGAATGAATTCTATAGAGCTACTGGTAGATGTTATGCGATCTCCTGGCCAGTTAATACCCTTCTCCACGAGAGCTCTTATGCTATTTCATTTCCCTGGAGGTGTAGAAAGTGATTCTGCCGACAACGATTCCTGTGATTCTCCTTTAGAACCAAGCAGTCCCATGTTTGATCTGTCAGACAAATATTGCAACGAAAGCCCAGAACTGGAAGATCACAGCTTCAAATTT

Fln Alignment:

sp_v1.1_unigene16731___VIRKIAEVVSDFYGGPA--SEQSAAKHFLDESPSAADNFEFQL-LGKIKNGLCRPRAMLFKVLADAVGLRSKLLVGLQVYDRVIHQPEPDKHMSLLVGMN-SIELLVDVMRSPGQLIPFSTRALMLFHFPGGVESDSADNDSCDSPLEPSSPMFDLSDKYCNESPEL
Q05609_______________VVDQLAKLICNRMGGPVIMGEDELVPMWKECIDGLKEIFKVVVPIGSLSVGLCRHRALLFKVLADIIDLPCRIAKGCKYCNR-------DDAASCLVRFGLDREYLVDLVGKPGHLWEPDS----LLNGPSSISISSPLRFPRPKPVEPAVDFRLLAKQYFSDSQSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain