SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16699

Length: 2260 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16699
CATGGGGAGCGACGCCCGTCCATCTCCGTCAGAGTCCGCCTGACTTTTCCATTTCCTTGCAGCAAGGTTCGATTTCAGACAAAAAGTCTGCTGCCATAAAAATGCGTTAACTCTGTCACCTGCGTGTCGCTCGGAATCAGAATTCAAGTCTGGATTGTCCGTGGCGGATCCCTGCTGCTGTACGAGGGATTTGATGTTTTCCCGGCGAAATTTGGGTTGAAATTGGCACCATATCGGAGACGGAGCCCGTCACTAGGGTTTTCTTCTGCTAAAGACGGCGGAAAACCTCAGCTACAAGGGGCACGGCTTATTTTTCAGGAGCATTTGGGGCAATGGCACGCTGAAGATTTGATGCGTCGAAGAATTTAACTTTTAACGATGTCAAGGCGAGGAATCGACTTTAAATGGTATGATGGATTCTTTCTATCAATGCTTGCTACCAGTGCAATTATTGTCTCAATCAATTGGAAGCGATACCATTCTTGTACATACCCTCTGCATATATGGATTCTGGTGGACTACACAACTGTCTTTGTATTCCGAGTTTTAATGTTTGTGGACAATGGGTTGGCAGCAGGAATGGGATTGGATCTAGGTCGCCAGCAAAGGTTTGTGCGATTCTGTGGGAGAATTGTGGTTCTTTCAATCCTTGTCCTAATTCTCTATCCATTTCTATGGGCTTGGACTGTAATTGGAAGCATATGGTTCACCAGTGCAAGAAATTGTCTACCTGAAAATGGTCAGAAATGGGGCTTCTTAATCTGGTTACTTTTTAGTTTCTGTGGACTTATTTGTATTGCCTGCATGTCTACTGGGAAGTGGTTGATGCGGAGGCAGGCACATCTACAACGGGCACAAGGGTTTCCTATTTCTGAATTTGGGGTTTTGGTTGATCTTATCAGAGTGCCTGAATGGGCATTTGAAGCTGCTGGGCAGGAGTTGCGGGGCATGGGACAAGATACTGCGACATACCACCCTGGCCTTTACTTGACACCGGCACAGAGGGAAGCAGTGGAAGCACTTATTCAGGAGCTTCCAAAATTCCGTATGAAGGCAGTGCCTACAGACTGCAGTGAGTGCCCTATCTGCCTTGAGGAGTTCCGTGTTGGGAATGAGGTACGTGGGCTCCCATGTGCACATAATTTTCATGTAGAATGCATTGATGAATGGCTGCGTCTGAACATAAAATGCCCTCGTTGCCGCTGTTCTGTGTTTCCTAATCTGGACCTTAGTGCTCTGGCAAACACACAGCGACCTCAAACTGGGGACTCTAGTAGATCTTCTCAGGCCTCGGCAAGCAGTTTCACAAGTATGCCCAGCAGTCGTTACATAAGAGCTCAACCCATGGGGCAAAGCAACCTCCTGCGTTTACAGGATCTGCTCCGTACTATTAGGGTGGAGAACTCAGTTCACAGTGAAATGAGTATAGGTGAAAGGGGGGCAACTAACCTTGCAGAGGGTTCAGTTACAGCTAATTTGGAGTCCAACCAATTAGAGAATTCAAGACACCTTTCAAATGAAGTTCATGCAAGCATACCAAATGGATATGCTGCAGGGAATCCAAATAACACTGATCCACCTACGAGAAATGGTGTGCACAGACAAGTACCATACAATGTCGCAGAAACAGTAACTGTGGTAGTTGATAGGTCTCCACCAGCTCGTTTTTGAGAAATTACTTCAGCCGAGCTCAGAAGTTCTTGGAGGATGTTTTGTTTTCCCTGATCAGCACTTTTAATGACCTTGTATATGCTTCTCTTTTCTTGGTGTATTTTAGAGGGAATGGCTTGGTTTTTGTGATATGTGAATCTCTGATGGAAAAATGTCCACTGGAGTAAAAGGGTCATTTAATTCAAGATCGCTACTTTTGAACAACAGTCTGTTCAGTGTATTTGAAGGACAACTCATTCAAAATGCATATGATACAAAACCATAATGAGAAAGTAACCTCACAGAAGAATAATTTCGTTGATGTAATTCATATTCATGACCTTTGGTCTCAGAAATTTGTGTTCTGCATTTATCTATCCAATTTACGTCTTTTAGTTGCAGAGTTGGAATCTATGACATTAAATATATCGCTTGGCATGTAAAGCATGACTGTTTGTTGTATTACAGGGACTGCCTTTTTCCATCATCATAGATTTTTGCACCAGTTTCAAGTACTATAATGTGATTCACTAAGGTCAATTTTGGGCTTCTCTCGTGGAACAAGTTGGACAATGAGACTTTTTTGAACGTTAAATGCTCCTAGAGTAAC

Ace file of the UniGene sp_v1.1_unigene16699

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] sp\|Q8GYT9.2\|SIS3_ARATH RecName: Full=E3 ubiquitin-protein ligase SIS3; AltName: Full=Protein SUGAR INSENSITIVE 3; Flags: Precursor	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein binding	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	80%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	80%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK49

Fln msg: your sequence is longer than subject: 431 - 325

Fln protein: MSRRGIDFKWYDGFFLSMLATSAIIVSINWKRYHSCTYPLHIWILVDYTTVFVFRVLMFVDNGLAAGMGLDLGRQQRFVRFCGRIVVLSILVLILYPFLWAWTVIGSIWFTSARNCLPENGQKWGFLIWLLFSFCGLICIACMSTGKWLMRRQAHLQRAQGFPISEFGVLVDLIRVPEWAFEAAGQELRGMGQDTATYHPGLYLTPAQREAVEALIQELPKFRMKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNIKCPRCRCSVFPNLDLSALANTQRPQTGDSSRSSQASASSFTSMPSSRYIRAQPMGQSNLLRLQDLLRTIRVENSVHSEMSIGERGATNLAEGSVTANLESNQLENSRHLSNEVHASIPNGYAAGNPNNTDPPTRNGVHRQVPYNVAETVTVVVDRSPPARF*

Protein Length: 432

Fln nts: CATGGGGAGCGACGCCCGTCCATCTCCGTCAGAGTCCGCCTGACTTTTCCATTTCCTTGCAGCAAGGTTCGATTTCAGACAAAAAGTCTGCTGCCATAAAAATGCGTTAACTCTGTCACCTGCGTGTCGCTCGGAATCAGAATTCAAGTCTGGATTGTCCGTGGCGGATCCCTGCTGCTGTACGAGGGATTTGATGTTTTCCCGGCGAAATTTGGGTTGAAATTGGCACCATATCGGAGACGGAGCCCGTCACTAGGGTTTTCTTCTGCTAAAGACGGCGGAAAACCTCAGCTACAAGGGGCACGGCTTATTTTTCAGGAGCATTTGGGGCAATGGCACGCTGAAGATTTGATGCGTCGAAGAATTTAACTTTTAACG_-_ATGTCAAGGCGAGGAATCGACTTTAAATGGTATGATGGATTCTTTCTATCAATGCTTGCTACCAGTGCAATTATTGTCTCAATCAATTGGAAGCGATACCATTCTTGTACATACCCTCTGCATATATGGATTCTGGTGGACTACACAACTGTCTTTGTATTCCGAGTTTTAATGTTTGTGGACAATGGGTTGGCAGCAGGAATGGGATTGGATCTAGGTCGCCAGCAAAGGTTTGTGCGATTCTGTGGGAGAATTGTGGTTCTTTCAATCCTTGTCCTAATTCTCTATCCATTTCTATGGGCTTGGACTGTAATTGGAAGCATATGGTTCACCAGTGCAAGAAATTGTCTACCTGAAAATGGTCAGAAATGGGGCTTCTTAATCTGGTTACTTTTTAGTTTCTGTGGACTTATTTGTATTGCCTGCATGTCTACTGGGAAGTGGTTGATGCGGAGGCAGGCACATCTACAACGGGCACAAGGGTTTCCTATTTCTGAATTTGGGGTTTTGGTTGATCTTATCAGAGTGCCTGAATGGGCATTTGAAGCTGCTGGGCAGGAGTTGCGGGGCATGGGACAAGATACTGCGACATACCACCCTGGCCTTTACTTGACACCGGCACAGAGGGAAGCAGTGGAAGCACTTATTCAGGAGCTTCCAAAATTCCGTATGAAGGCAGTGCCTACAGACTGCAGTGAGTGCCCTATCTGCCTTGAGGAGTTCCGTGTTGGGAATGAGGTACGTGGGCTCCCATGTGCACATAATTTTCATGTAGAATGCATTGATGAATGGCTGCGTCTGAACATAAAATGCCCTCGTTGCCGCTGTTCTGTGTTTCCTAATCTGGACCTTAGTGCTCTGGCAAACACACAGCGACCTCAAACTGGGGACTCTAGTAGATCTTCTCAGGCCTCGGCAAGCAGTTTCACAAGTATGCCCAGCAGTCGTTACATAAGAGCTCAACCCATGGGGCAAAGCAACCTCCTGCGTTTACAGGATCTGCTCCGTACTATTAGGGTGGAGAACTCAGTTCACAGTGAAATGAGTATAGGTGAAAGGGGGGCAACTAACCTTGCAGAGGGTTCAGTTACAGCTAATTTGGAGTCCAACCAATTAGAGAATTCAAGACACCTTTCAAATGAAGTTCATGCAAGCATACCAAATGGATATGCTGCAGGGAATCCAAATAACACTGATCCACCTACGAGAAATGGTGTGCACAGACAAGTACCATACAATGTCGCAGAAACAGTAACTGTGGTAGTTGATAGGTCTCCACCAGCTCGTTTTTGA___GAAATTACTTCAGCCGAGCTCAGAAGTTCTTGGAGGATGTTTTGTTTTCCCTGATCAGCACTTTTAATGACCTTGTATATGCTTCTCTTTTCTTGGTGTATTTTAGAGGGAATGGCTTGGTTTTTGTGATATGTGAATCTCTGATGGAAAAATGTCCACTGGAGTAAAAGGGTCATTTAATTCAAGATCGCTACTTTTGAACAACAGTCTGTTCAGTGTATTTGAAGGACAACTCATTCAAAATGCATATGATACAAAACCATAATGAGAAAGTAACCTCACAGAAGAATAATTTCGTTGATGTAATTCATATTCATGACCTTTGGTCTCAGAAATTTGTGTTCTGCATTTATCTATCCAATTTACGTCTTTTAGTTGCAGAGTTGGAATCTATGACATTAAATATATCGCTTGGCATGTAAAGCATGACTGTTTGTTGTATTACAGGGACTGCCTTTTTCCATCATCATAGATTTTTGCACCAGTTTCAAGTACTATAATGTGATTCACTAAGGTCAATTTTGGGCTTCTCTCGTGGAACAAGTTGGACAATGAGACTTTTTTGAACGTTAAATGCTCCTAGAGTAAC

Fln Alignment:

sp_v1.1_unigene16699___PAQREAVEALIQELPKFRMKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNIKCPRCR
A9NK49_______________PASRSAVEAM--PAVEISESHLSSDVSQCAVCLEEFELGSEARQMPCKHMFHSDCIQPWLKLHSSCPVCR

SNPs (tot: 77)

Position	A %	C %	G %	T %	Probability
108	20		80		0.995493
123		80		20	0.995493
170		40	60		1.0
175		60		40	1.0
237	60			40	1.0
320		33		66	0.997452
404	66			33	0.997452
406			33	66	0.997452
408			33	66	0.997452
411	66	33			0.997452
412	66			33	0.997452
418	66		33		0.997452
420		33	66		0.997452
424		33	66		0.997452
425	33		66		0.997452
548	33			66	0.997452
797			15	84	0.999986
799	84	15			0.999986
800			15	84	0.999986
802			15	84	0.999986
803	15		84		0.999986
804		15		84	0.999986
805	84	15			0.999986
809		84	15		0.999986
816	16		83		0.999991
989	20		80		0.995493
995	80		20		0.995493
997			20	80	0.995493
1001		80	20		0.995493
1004	20	80			0.995493
1005	20		80		0.995493
1010	80			20	0.995493
1014	20		80		0.995493
1015		20	80		0.995493
1016	80			20	0.995493
1023		25	75		0.996473
1218		16		83	0.994512
1420		83	16		0.999991
1423	83	16			0.999991
1424			83	16	0.999991
1427	76	15		7	0.999983
1428	76	7		15	0.999983
1429	76		23		1.0
1431		15	84		0.999986
1433		23	76		1.0
1435	76	15		7	0.999983
1436	15			84	0.999986
1485		11		88	0.999952
1486			11	88	0.999952
1488		11	88		0.999952
1490	88			11	0.999952
1492	11			88	0.999952
1495	88			11	0.999952
1496	88		11		0.999952
1497		88	11		0.999952
1499	88			11	0.999952
1500	88		11		0.999952
1502		11		88	0.999952
1504		11	88		0.999952
1505	88			11	0.999952
1506		11	88		0.999952
1624	88	3	7		0.999079
1625	88			11	1.0
1626		7		92	0.999664
1629		92	8		0.999718
1630	8		88	4	0.999262
1632	88	8		4	0.999262
1633		4	88	8	0.999262
1634	92			8	0.999718
1635	88	4	8		0.999262
1636	88		8	4	0.999262
1638	92			8	0.999718
1641	92	8			0.999718
1676	23			76	1.0
1695		90		9	0.999872
1997		10		90	0.90298
2180	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain