SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16697

Length: 2276 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16697
CGTCGTGACCTTGGCTGTCACTCAATATGGGTGCCTGGGGCCAAAATGGCAAAGCAAATTGGGCAATGCAGAGCAGTCCGAAGCCTAAAAGCCTAGAGTCTGCTGTTGGAAATATGGACAGGCGGGATCTTACTGTCCCTCCCCCACTTGTCAATGGCTGGCAATGGGGAAGACACAATGGCGGCAGTGCGAACTTGAATTCATCGATGGCATCGCCACCAGCTGGAAAAGGTGTTGGACAGGGTGGGGCAAAGGGTAGTGAAGAGAATTCTGAACTGGGAGGTAAGATGCTATCAAAACTTCTTCCTTTTGAGCAATCAGGGGAACCCTGTCATGAAACCAGCAGAGCAGGTCATCAGTCTAGTGATGGTGATGAAGAGATTGATAATCTTGACAGCGATGATGATTTTATGAGCAGTGATGACTGTGACTCTGACGGTAGTGATGTGAGCCATGAGACCCTAAAGAAGAATAAGTGGTTCAAGATTTTTTTTTGAATCCCTGGACAGCTTGAGTATTGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCATGCAGAGGTGGTGTTGGGGCAATTGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCAAAATCTATCAGATCGAAGAGGGTAAAGTTACACCGCAAACTTGCGGAAGTACTGGAAGAAGAGTTAGCAAGGCGAGGATCTGCATGTGTAATTGCAGAGGAGATGTTTGGCAAGTGGAAGGGCTTGCGAGAGACGGTAAACGATCAGGAAATCGTTTGGCCTCCTATGGTTATTATTCAGAACACACTTCTTGATCAAGATGAAAATGAGAAGTGGATAGGAATGGGAAATAAAGAATTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGAATGAGTGTACTTATATTTGAGGAATCGGCAATGGGGTACTTGGAGGCAGAGCGTTTACACAAGCAGTTTTTGAAGGAAGGGCGAGGAAAAGATGATTGGGAACGACGCCCAGTGTTGTTTCATCCAGGTGGAAACCGTATATTATATGGTTACTTTGCAACAAAGGAAGAGATGGAGATTTTCAACAGACACTCGAAAGGCAAAACAAGTTTGAAGTATGATATGAGATCCTATCACAAGATGGTAGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAAGCTCACCTGGTTTAAGACAAAAGTTGCTAAGCAACAGGAGCACAGTAGAACTTTAGAAGAGACAGTTAGTATAGTGGCGTCAAAATTGCGGATGAGAGAAGCTGAAATTAAGATTATTAGACAGAGGGCCACAGAGCAACATGAGGAATGCAAGAAAGAGATGGACTATTTGGAGCAAAGTTATAGACAACAAATTGATCAGCTGAATGAAGATGTTGTAAAAGGAGAATTGCAGTTGGAAACGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGGAGGAGGTTGATAGTTGAAACCAGTTTGAAAGATTATGAAGAATATGAAAGGATGAGGCAAGAACTTATTAAAACGCATGACAAAAGGAGGAGGGAAATTAAACTAAGGCAATTACAGGAGGAAGTAGCCTTCGAGAAGGAACTAGAGCGTGAAAGGGTTGTACTCCTAGAGAAATATCAGAAGAAAAGGCAGGAAGTAGACGGTGATGCTGTTTAATTTCAGAAGCCAGGGATGCGTTTAAATAGGTATGCTCTATATGTTAGAACCATTGTTTGGTTGTTGGGCAATCGTACTTTTGTAGCCATGTATTTGTTTCAGAACTTGTTACAACGTGACCATGACAAACTGGAAAAAAACTAAAACCCTTAAGGGGATTCTGCATTTGCATTTGTTTGAAGAGGAGTATTAGTGTGGAACGAAGTACCAACCAAGAGATATATGCCATTGAACATTACCACCACATTTGCTACTAATATAAACTTGTTTTTTGATGAGAATGTTAAACCTTCCTCTGTTAGGGGTGTCCTAAAGATATTCCTAAAGAAATGTGGTTTCCATAAGATGTTACAGAGTGAAGCCGGTGGCCACAAATTTCATAACGATGATGATGATGGCAATATGAATTCGCTTGACTTTATTAATTTCATGTCTCAGAATTTCAATATTTCCATATA

Ace file of the UniGene sp_v1.1_unigene16697

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	rgd1, SGS3, lbl1; ragged seedling1	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	suppressor of silencing	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	68%
Blast2go	vegetative phase change	GO:0010050	Biological Process	68%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNA2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 451 - 419

Fln protein: RRISGSRFFFESLDSLSIDEMNDPERQWHCPACRGGVGAIDWYRGMQPIVAHAKSIRSKRVKLHRKLAEVLEEELARRGSACVIAEEMFGKWKGLRETVNDQEIVWPPMVIIQNTLLDQDENEKWIGMGNKELVEYFKGYKAMKARHAYGPKGHRGMSVLIFEESAMGYLEAERLHKQFLKEGRGKDDWERRPVLFHPGGNRILYGYFATKEEMEIFNRHSKGKTSLKYDMRSYHKMVVEPMRQMDEDNQKLTWFKTKVAKQQEHSRTLEETVSIVASKLRMREAEIKIIRQRATEQHEECKKEMDYLEQSYRQQIDQLNEDVVKGELQLETMQEEFKKVHLDRCHQLEVDSAKLPKDTQVVNDEQQEQRIKIDEEIARRRLIVETSLKDYEEYERMRQELIKTHDKRRREIKLRQLQEEVAFEKELERERVVLLEKYQKKRQEVDGDAV*

Protein Length: 452

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATGGGTGCCTGGGGCCAAAATGGCAAAGCAAATTGGGCAATGCAGAGCAGTCCGAAGCCTAAAAGCCTAGAGTCTGCTGTTGGAAATATGGACAGGCGGGATCTTACTGTCCCTCCCCCACTTGTCAATGGCTGGCAATGGGGAAGACACAATGGCGGCAGTGCGAACTTGAATTCATCGATGGCATCGCCACCAGCTGGAAAAGGTGTTGGACAGGGTGGGGCAAAGGGTAGTGAAGAGAATTCTGAACTGGGAGGTAAGATGCTATCAAAACTTCTTCCTTTTGAGCAATCAGGGGAACCCTGTCATGAAACCAGCAGAGCAGGTCATCAGTCTAGTGATGGTGATGAAGAGATTGATAATCTTGACAGCGATGATGATTTTATGAGCAGTGATGACTGTGACTCTGACGGTAGTGATGTGAGCCATGAGACCCTAAAGAAGAATAAGTGGTTCAAGATTTTTTTTTGAATCCCTGGACAGCTTGAGTATTGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCATGCAGAGGTGGTGTTGGGGCAATTGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCAAAATCTATCAGATCGAAGAGGGTAAAGTTACACCGCAAACTTGCGGAAGTACTGGAAGAAGAGTTAGCAAGGCGAGGATCTGCATGTGTAATTGCAGAGGAGATGTTTGGCAAGTGGAAGGGCTTGCGAGAGACGGTAAACGATCAGGAAATCGTTTGGCCTCCTATGGTTATTATTCAGAACACACTTCTTGATCAAGATGAAAATGAGAAGTGGATAGGAATGGGAAATAAAGAATTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGAATGAGTGTACTTATATTTGAGGAATCGGCAATGGGGTACTTGGAGGCAGAGCGTTTACACAAGCAGTTTTTGAAGGAAGGGCGAGGAAAAGATGATTGGGAACGACGCCCAGTGTTGTTTCATCCAGGTGGAAACCGTATATTATATGGTTACTTTGCAACAAAGGAAGAGATGGAGATTTTCAACAGACACTCGAAAGGCAAAACAAGTTTGAAGTATGATATGAGATCCTATCACAAGATGGTAGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAAGCTCACCTGGTTTAAGACAAAAGTTGCTAAGCAACAGGAGCACAGTAGAACTTTAGAAGAGACAGTTAGTATAGTGGCGTCAAAATTGCGGATGAGAGAAGCTGAAATTAAGATTATTAGACAGAGGGCCACAGAGCAACATGAGGAATGCAAGAAAGAGATGGACTATTTGGAGCAAAGTTATAGACAACAAATTGATCAGCTGAATGAAGATGTTGTAAAAGGAGAATTGCAGTTGGAAACGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGGAGGAGGTTGATAGTTGAAACCAGTTTGAAAGATTATGAAGAATATGAAAGGATGAGGCAAGAACTTATTAAAACGCATGACAAAAGGAGGAGGGAAATTAAACTAAGGCAATTACAGGAGGAAGTAGCCTTCGAGAAGGAACTAGAGCGTGAAAGGGTTGTACTCCTAGAGAAATATCAGAAGAAAAGGCAGGAAGTAGACGGTGATGCTGTTTAA___TTTCAGAAGCCAGGGATGCGTTTAAATAGGTATGCTCTATATGTTAGAACCATTGTTTGGTTGTTGGGCAATCGTACTTTTGTAGCCATGTATTTGTTTCAGAACTTGTTACAACGTGACCATGACAAACTGGAAAAAAACTAAAACCCTTAAGGGGATTCTGCATTTGCATTTGTTTGAAGAGGAGTATTAGTGTGGAACGAAGTACCAACCAAGAGATATATGCCATTGAACATTACCACCACATTTGCTACTAATATAAACTTGTTTTTTGATGAGAATGTTAAACCTTCCTCTGTTAGGGGTGTCCTAAAGATATTCCTAAAGAAATGTGGTTTCCATAAGATGTTACAGAGTGAAGCCGGTGGCCACAAATTTCATAACGATGATGATGATGGCAATATGAATTCGCTTGACTTTATTAATTTCATGTCTCAGAATTTCAATATTTCCATATA

Fln Alignment:

sp_v1.1_unigene16697___FESLDSLSIDEMNDPERQWHCPACRGGVGAIDWYRGMQPIVAHAKSIRSKRVKLHRKXXXXXXXXXXRRGSACVIAEEMFGKWKGLRETVNDQEIVWPPMVIIQNTLLDQDENEKWIGMGNKELVEYFKGYKAMKARHAYGPKGHRGMSVLIFEESAMGYLEAERLHKQFLKEGRGKDDWERRPVLFHP-GGNRILYGYFATKEEMEIFNRHSKGKTSLKYDMRSYHKMVVEPMRQMDEDNQKLTWFKTKVAKQQEHSRTLEETVSIVASKLRMREAEIKIIRQRATEQHEECKKEMDYLEQSYRQQIDQLNEDVVKGELQLETMQE
B8LNA2_______________FESMDALTFKEVNN--REWTCPACRAG--AAETHKGLKPLIDHAKNARQWNVRLHRKLVKVLEEELKRRSAAGFAVQEVYGKWLSLQEGHIDSQIVWPPIVIVENTGFKLQDNQQSSGMGNKELLEAFKAYKPTKAKQAYGPKGHRGRSLLIFEESAVGYLEADRLQKDFLKEGRGRADWDRRGTLIHPTGAKRVLYGYMANKEDMENFNKHS-GSGKSKYDMLSYKAMVIEPVKKMKENSQKLDWLDAKMLEDKAITKSLEETVDTMAARLEIQKSEVKIIIGKVAEKCDEWKKGLDHLERIYKEQIDELMGDVEKRDKEIKQMKE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1145	80	20			0.995493
1148		20		80	0.995493
1153	80	20			0.995493
1154		20	80		0.995493
1156	80			20	0.995493
1157			20	80	0.995493
1159	80	20			0.995493
1161	80		20		0.995493
1163		20	80		0.995493
1165		20	80		0.995493
1169	20	80			0.995493
1187	87			12	0.992554
1189	87			12	0.992554
1192		87		12	0.992554
1205	12		87		0.992554
1270			85	14	0.993533
1663	82	5		11	0.999919
1665			82	17	1.0
1668	82	11		5	0.999919
1669			88	11	0.999952
1670	88	11			0.999952
1673			9	90	0.999842
1675	86	9	4		0.999642
1676			13	86	1.0
1678	85		14		1.0
1680	85	14			1.0
1681	90	9			0.999872
1682		90		9	0.999872
1684		90	9		0.999872
1685	90	9			0.999872
1688	90			9	0.999872
1691	86	9		4	0.999642
1692	86	4		9	0.999642
1871			90	10	0.999898
2016	16			83	0.994512
2194		50		50	1.0
2233			50	50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2203	2215	GAT GAT GAT GAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain