SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16695

Length: 1388 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16695

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-processing-splicing factor, putative n=2 Tax=Magnoliophyta RepID=B9RV85_RICCO	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	96%
Blast2go	protein	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	97%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	97%
Blast2go	Metabolic pathways	01100		0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	97%
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	97%
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	97%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	97%
Blast2go	spliceosomal complex	GO:0005681	Cellular Component	97%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	97%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	97%
Blast2go	membrane	GO:0016020	Cellular Component	97%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	IPR019581	-	0.0	97%
Blast2go	RNA recognition motif, spliceosomal PrP8	IPR019582	-	0.0	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U143

Fln msg: Distance to subject end: 1044 aas, your sequence is shorter than subject: 462 - 2347

Fln protein: LSYKHDRNSILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQDIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNIVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLVLGLTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDIKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMSQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKC

Protein Length: 463

Fln nts: ACTGTCATATAAACATGACAGAAACTCAATATTAGCACTTGAAAGATTGAAAGAATCTTATAGTGTTGCTGTCCGATTAAATCAACAACAGAGGGAAGAGCTGGGTCTTATCGAGCAGGCATATGATAATCCACATGAGGCATTATCACGTATCAAACGTCATCTGCTTACACAGCGTGCCTTCAAAGAAGTGGGCATTGAATTTATGGACTTGTATAGCTATCTGATCCCTGTATATGAAATTGAACCTCTCGAGAAAATTACAGATGCTTATCTTGATCAATATCTTTGGTATGAAGGTGACAAACGCCATCTCTTTCCAAACTGGATCAAACCTGCAGATTCAGAGCCACCTCCACTTTTGGTATATAAGTGGTGCCAAGGAATCAATAATTTGCAGGATATATGGGATACCAGTGAAGGTCAATGCGTTGTGATGCTTCAGACAAAATTTGAAAAGTTCTTTGAAAAAATAGATCTGACAATGTTAAACAGGCTTTTGCGTTTGGTGCTTGACCACAACATTGCTGATTATGTGACTGCGAAAAACAACATTGTTCTATCATACAAAGATATGAGCCATACCAATTCATATGGGCTGATTCGAGGTCTTCAGTTTGCTTCCTTTGTTGTGCAATATTATGGTCTGGTCTTGGATCTCCTGGTCCTTGGTTTGACTCGGGCAAGTGAAATAGCTGGTCCTCCACAGATGCCAAATGAATTTATTACTTACTGGGATACAAAAGTGGAGACGAGGCATCCTATAAGATTGTATTCTCGTTATATTGACAAGGTGCACATTCTTTTTAGATTCACTCATGAAGAGGCAAGGGATCTTATCCAGCGCTACCTTACAGAACATCCAGATCCAAACAATGAAAACATGGTTGGTTACAACAACAAAAAGTGCTGGCCTAGAGATGCTCGTATGAGGCTAATGAAACATGATGTTAATCTCGGGAGGAGTGTTTTCTGGGATATAAAGAACAGACTCCCTCGTAGTATCACAACATTAGAATGGGAGAACAGTTTTGTCTCTGTTTATAGCAAAGACAACCCAAATTTGCTTTTCAGCATGTGTGGGTTTGAAGTTCGAATATTACCAAAGATAAGAATGTCTCAAGAAGCATTCAGCAATACAAAGGATGGAGTCTGGAATTTGCAAAATGAGCAGACTAAAGAGCGCACTGCTGTTGCCTTCTTGCGAGTTGATGATGAACACATGAAGGTGTTTGAGAATCGTGTTAGGCAGATCCTCATGTCATCAGGGTCAACAACCTTTACCAAAATCGTAAACAAGTGGAATACTGCACTAATAGGACTCATGACCTATTTCCGTGAAGCAACAGTGCATACACAGGAGCTTCTTGATCTCCTTGTCAAATGTG

Fln Alignment:

sp_v1.1_unigene16695___LSYKHDRNS-ILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQDIWDTSEGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNIVLSYKDMSHTNSYGLIRGLQFASFXXXXXXXXXXXXXXXXTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDIKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMSQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKC
D7U143_______________LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKELTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1020			20	80	0.995493
1021	80		20		0.995493
1039		16		83	0.994512
1043			16	83	0.994512
1047	16			83	0.994512
1048		16		83	0.994512
1049		16		83	0.994512
1050	83			16	0.994512
1052	83		16		0.994512
1055	83			16	0.994512
1059	83			16	0.994512
1064		83		16	0.994512
1086			85	14	0.993533
1267	25		75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain