SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16687

Length: 2458 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene16687
ATGGGGACACACAAATAATAGACAAGGTACATCGAACTTCAGGCGCTCTGCGGCCTTTGCTTTGGGATTAAATAATGGGTTCCTGAAAAAGGCACAAAACCACGAGGATTCCCTTAAACAATTGACGTCATAAATAAATTATACTCCCCGGAGCATGTATTATCGGCTCTGGTTTAAATCCTGGGACTGCTTCGACTAGCAAGGCGTGCACCATGATGAAGAAATAGAGGAGCGCCGCTTCCATTTATGTAGCAGATTTAAGATTTGTGTTGAGGAGAAGCTCTTCATCTATTTGTCTATTTTATTTGATGAAATATGGCTATACGTTAAGCTCTACAATGGCGGGCAGTGGGCCAGAAAGGCCTCCGAGGCATTTGCAGATGAAGCTTTTGTTTGGAATGAAAAGCACACACGGGCTCATGGTGGGTGGAAACCACACTGCCGCCAGATTTTGCACGCGATAGATCCCGTCTCCGCTCCCCCGCTGGTAAATCTCCTTTTCTTTCCTTTGCTCGATCTTTATTGTTCGGCAAATGACCGCAACGTTTCCCAACCAGAAACGATCTGAGTTTGAAAAATCTCAAATCCTGGACGTGTTCTTAAAGAAAAAGAAATCTGACATCCTGAGTGATGAAAAATGGCAAAATAAGGCCAGAGTTCGCTAGATCTGTCCTCCTTCCACTGCCTTAGCTCTCGATCTGATCACATCAGAGGCGCGATGGCCGCAAAACTGATAAAGCTGGAACTTTTGTACGGCTGCATGGGGAATAGGATCGTGGTCCGGACAATTTTCTTTGCAATGGCCCTGGCCGCAATGCCAGTTCTTTACGTTTTCCAAGATCCCTCGCCATGTGACCTCTCGGACTATCCGGATTACTGCATCGTTAATTTCAGGAGCAACCCAAAATTGCCGTTCCGGAGGATCTCATTTCTTTCCTTCTCCAACAACACCAAACACCCCGAGGTCTCCAAGACTGATTCCCTCTACAAACCCAGACCCTCTGTGCGTGTAGGGATTGAATCCCACGCCCCAAAGAAGATCTGGGCGGGCAAGGCGTGGAGACAGGAGTTGGAATTTTACTCCGCGATCTTTCAGAAGCTTAGCGAGCGGGGTTTCCTTCGTCCCGGGTTCAAAGCGCTCTGCGTTGGGGCTGGCTCGGGGCAACCAGTGCTGGCGCTGCGGGAAAACGGCCTGCCAGACGCAATAGGAATCGATCGCAGGTCGTTCGCGCCGCTGGTGAGAAAGGGCGATATTAACCGTCTTCCCTTTGCTCATGATTCATTCGACTTGGTATTCTCGGGGTCGTTCGATCGAGCCCTGGTTCCCGCACTGCTCGCTTCCGAGGTCGAGCGCACGCTTAAGACAGGAGGTGTGGCAGTGATGCTGGTCTCGCCGCGTCGATTAAATGTGGGCAATGCCATGAACCCCTTCTACTCGATAAGTCCCGTGGTAGCCCTCTTCAGAAACTCGGATGTCATTCATGTGACTCGGGTCGGGCCGCCTAATGGCCAGGATGCAACCATAATTGTTCTTCGCAAGCGAACTTTCGGCAATTCTAAGTCACTGGGATTGGTACAGGAATATTCATGCCCTAAGCAGAACAGGAGCTTAGTTAAGCTTGCAGAACCCTTGACAATGGACCACAGCAATGCCAAATACTTGCCCACTGTGAAAGACATCAGCGCCTATAAACGCCATATTTATGTAGAAATTGGGGGCAACAACAACGCCAACACTATAGATGCAGATTCAGGGTGGTTCAGGGCTTCTTACCCAAAGCAAAACCAAAGTTTCGATATCTATGTCCTTACTGGTAATTCTCCTGGATTCAAGTCTCTGGCACCTGGATCACTGAATTCAATAAAACAGGTCGTGGATGATGATGCCAGGCTGAGCAGCAGCAGTGAATCTGGTACAGCAGGCCCGGACATTGCAGGATGGCTGAGTGAGATGGGTGTTAGCGATGATGATTTTGTGGTTGTGAAGATGGGATTCGAACATGCGACCAAAGAGATGATCAGAGAATTGATTAATGAGAGCGTAACAGGGTTTATGTGTCTCATTGACGACCTCTTCCTGCAGTGTTCTTCTTCGTCTTCTTTCCAGGACGGCTTCAAAGATGGCCGCTTACTTGAAGAAGTTAATGGGGAATGCCTGCAGTTCCTTCGGACTCTCAGAGATCATGGTATTTTCGTGCATCGATGGTGATTGAATAGCAGGTAAGCACTATCGCTACTACTATTATTACTACTAAATAATGCTATAGAATAAAATGCTTGTTCGTCTTGAAGAGAGATTTGGCGGCAGCTGTCTGAGGTTGTGCCTGACGAATCCATGGCCGGTTCATTTATAATGTGCAAGCGTCCCAGTATTATTTTCTTTTGCATTAAACCGTCTGGATTAAGTTCTCGTTATAGAATGTGCTTTGGATTTAGAAATTAAGAAATATTTTTGCAC

Ace file of the UniGene sp_v1.1_unigene16687 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyltransf_11 domain containing protein	-	-	4.0e-08	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	90%
Blast2go	Tetracycline biosynthesis	00253	90%
Blast2go	Histidine metabolism	00340	90%
Blast2go	Tyrosine metabolism	00350	90%
Blast2go	Phenylalanine metabolism	00360	90%
Blast2go	Tryptophan metabolism	00380	90%
Blast2go	Benzoxazinoid biosynthesis	00402	90%
Blast2go	Selenocompound metabolism	00450	90%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	90%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	90%
Blast2go	Methane metabolism	00680	90%
Blast2go	Porphyrin and chlorophyll metabolism	00860	90%
Blast2go	Carotenoid biosynthesis	00906	90%
Blast2go	Phenylpropanoid biosynthesis	00940	90%
Blast2go	Flavonoid biosynthesis	00941	90%
Blast2go	Anthocyanin biosynthesis	00942	90%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	90%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	90%
Blast2go	Insect hormone biosynthesis	00981	90%
Blast2go	Biosynthesis of type II polyketide products	01057	90%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	90%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyltransferase type 11	IPR013216	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR4

Fln msg: your sequence is shorter than subject: 497 - 528

Fln protein: MAAKLIKLELLYGCMGNRIVVRTIFFAMALAAMPVLYVFQDPSPCDLSDYPDYCIVNFRSNPKLPFRRISFLSFSNNTKHPEVSKTDSLYKPRPSVRVGIESHAPKKIWAGKAWRQELEFYSAIFQKLSERGFLRPGFKALCVGAGSGQPVLALRENGLPDAIGIDRRSFAPLVRKGDINRLPFAHDSFDLVFSGSFDRALVPALLASEVERTLKTGGVAVMLVSPRRLNVGNAMNPFYSISPVVALFRNSDVIHVTRVGPPNGQDATIIVLRKRTFGNSKSLGLVQEYSCPKQNRSLVKLAEPLTMDHSNAKYLPTVKDISAYKRHIYVEIGGNNNANTIDADSGWFRASYPKQNQSFDIYVLTGNSPGFKSLAPGSLNSIKQVVDDDARLSSSSESGTAGPDIAGWLSEMGVSDDDFVVVKMGFEHATKEMIRELINESVTGFMCLIDDLFLQCSSSSSFQDGFKDGRLLEEVNGECLQFLRTLRDHGIFVHRW*

Protein Length: 498

Fln nts: ATGGGGACACACAAATAATAGACAAGGTACATCGAACTTCAGGCGCTCTGCGGCCTTTGCTTTGGGATTAAATAATGGGTTCCTGAAAAAGGCACAAAACCACGAGGATTCCCTTAAACAATTGACGTCATAAATAAATTATACTCCCCGGAGCATGTATTATCGGCTCTGGTTTAAATCCTGGGACTGCTTCGACTAGCAAGGCGTGCACCATGATGAAGAAATAGAGGAGCGCCGCTTCCATTTATGTAGCAGATTTAAGATTTGTGTTGAGGAGAAGCTCTTCATCTATTTGTCTATTTTATTTGATGAAATATGGCTATACGTTAAGCTCTACAATGGCGGGCAGTGGGCCAGAAAGGCCTCCGAGGCATTTGCAGATGAAGCTTTTGTTTGGAATGAAAAGCACACACGGGCTCATGGTGGGTGGAAACCACACTGCCGCCAGATTTTGCACGCGATAGATCCCGTCTCCGCTCCCCCGCTGGTAAATCTCCTTTTCTTTCCTTTGCTCGATCTTTATTGTTCGGCAAATGACCGCAACGTTTCCCAACCAGAAACGATCTGAGTTTGAAAAATCTCAAATCCTGGACGTGTTCTTAAAGAAAAAGAAATCTGACATCCTGAGTGATGAAAAATGGCAAAATAAGGCCAGAGTTCGCTAGATCTGTCCTCCTTCCACTGCCTTAGCTCTCGATCTGATCACATCAGAGGCGCG_-_ATGGCCGCAAAACTGATAAAGCTGGAACTTTTGTACGGCTGCATGGGGAATAGGATCGTGGTCCGGACAATTTTCTTTGCAATGGCCCTGGCCGCAATGCCAGTTCTTTACGTTTTCCAAGATCCCTCGCCATGTGACCTCTCGGACTATCCGGATTACTGCATCGTTAATTTCAGGAGCAACCCAAAATTGCCGTTCCGGAGGATCTCATTTCTTTCCTTCTCCAACAACACCAAACACCCCGAGGTCTCCAAGACTGATTCCCTCTACAAACCCAGACCCTCTGTGCGTGTAGGGATTGAATCCCACGCCCCAAAGAAGATCTGGGCGGGCAAGGCGTGGAGACAGGAGTTGGAATTTTACTCCGCGATCTTTCAGAAGCTTAGCGAGCGGGGTTTCCTTCGTCCCGGGTTCAAAGCGCTCTGCGTTGGGGCTGGCTCGGGGCAACCAGTGCTGGCGCTGCGGGAAAACGGCCTGCCAGACGCAATAGGAATCGATCGCAGGTCGTTCGCGCCGCTGGTGAGAAAGGGCGATATTAACCGTCTTCCCTTTGCTCATGATTCATTCGACTTGGTATTCTCGGGGTCGTTCGATCGAGCCCTGGTTCCCGCACTGCTCGCTTCCGAGGTCGAGCGCACGCTTAAGACAGGAGGTGTGGCAGTGATGCTGGTCTCGCCGCGTCGATTAAATGTGGGCAATGCCATGAACCCCTTCTACTCGATAAGTCCCGTGGTAGCCCTCTTCAGAAACTCGGATGTCATTCATGTGACTCGGGTCGGGCCGCCTAATGGCCAGGATGCAACCATAATTGTTCTTCGCAAGCGAACTTTCGGCAATTCTAAGTCACTGGGATTGGTACAGGAATATTCATGCCCTAAGCAGAACAGGAGCTTAGTTAAGCTTGCAGAACCCTTGACAATGGACCACAGCAATGCCAAATACTTGCCCACTGTGAAAGACATCAGCGCCTATAAACGCCATATTTATGTAGAAATTGGGGGCAACAACAACGCCAACACTATAGATGCAGATTCAGGGTGGTTCAGGGCTTCTTACCCAAAGCAAAACCAAAGTTTCGATATCTATGTCCTTACTGGTAATTCTCCTGGATTCAAGTCTCTGGCACCTGGATCACTGAATTCAATAAAACAGGTCGTGGATGATGATGCCAGGCTGAGCAGCAGCAGTGAATCTGGTACAGCAGGCCCGGACATTGCAGGATGGCTGAGTGAGATGGGTGTTAGCGATGATGATTTTGTGGTTGTGAAGATGGGATTCGAACATGCGACCAAAGAGATGATCAGAGAATTGATTAATGAGAGCGTAACAGGGTTTATGTGTCTCATTGACGACCTCTTCCTGCAGTGTTCTTCTTCGTCTTCTTTCCAGGACGGCTTCAAAGATGGCCGCTTACTTGAAGAAGTTAATGGGGAATGCCTGCAGTTCCTTCGGACTCTCAGAGATCATGGTATTTTCGTGCATCGATGGTGA___TTGAATAGCAGGTAAGCACTATCGCTACTACTATTATTACTACTAAATAATGCTATAGAATAAAATGCTTGTTCGTCTTGAAGAGAGATTTGGCGGCAGCTGTCTGAGGTTGTGCCTGACGAATCCATGGCCGGTTCATTTATAATGTGCAAGCGTCCCAGTATTATTTTCTTTTGCATTAAACCGTCTGGATTAAGTTCTCGTTATAGAATGTGCTTTGGATTTAGAAATTAAGAAATATTTTTGCAC

Fln Alignment:

sp_v1.1_unigene16687___MAAKLIKLELLYGCMGNRIVVRTIFFAMALAAMPVLYVFQDPSPCD-LSDYPDYCIVNFRSNPKLPFRRISFLSFSNNTKHPEVSKTDSLYKPRPSVRVGIESHAPKKIWAGKAWRQELEFYSAIFQKLSERGFLRPGFKALCVGAGSGQPVLALRENGLPDAIGID-RRSFAPLVRKGDINRLPFAHDSFDLVFSGSFDRALVPALLASEVERTLKTGGVAVMLVSPRRLNVGNAMNPFYSISPVVALFRNSDVIHVTRVGPPNGQDATIIVLRKRTFGNSKS----------------------------------------------------LGLVQEYSCPKQNRSLVKLAEPLTMDHSNAKYLPTVKDISAYKRHIYVEIGGNNNA---NTIDADSGWFRASYPKQNQSFDIYVLT--GNSPGFKSLAPGSLNSIKQVVDDDARLSSSSESGTAGPDIAGWLSEMGVSDDDFVVVKMGFEHATKEMIRELINESVTGFMCLIDDLFLQCXXXXSFQDGFKDGRLLEEVNGECLQFLRTLRDHGIFVHRW
B8LQR4_______________MAAKLLKLELIYGCMGKKLMLRTLFFAIAQAAVSVLYAVHDAAPCVYISDCPDDFMVDF-DRPRWPLIRRNSLQNVRDQARPEISEPNV----RLSGGLGIESHPPIKFWANKTWREKVEFYSAIFRDLAARGLLRSGLKALCVGASSDVSVVALRENGLLDATAVDDMRSLAPM--KADNWRLPFADNSFEFVFSGSFDRATVPALLASEIERTLKANGVAVMLVSQRRPNMGKPSNLMHSLSPVVALFKCSDVVHVTTSGLPNSQETTVIALRKRPSGVSKQNRSLTKRPEPKSMNHSNAIHLPKVKDYPRSKQNGSLTKLAEPRTMNRSNAIHLPKVKDNPRSKQNRSLTKLAEPLTMNHSNAIYLPIVKDISDHKRHIYVEIGGNSQSKVNNTVNADAGWFLASYPKQNQTFDTYALNSHANMSGSESLPRRSLNSIKQVVGDNGSSRSRERF-----DIGGWLSEMSVSDEDFVVVKMGFEHVT----REMINKRGTGFMRLIDELFLQC-----------SSELSDKVHMECLQFLQTLRDNGVFVHRW

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
106		25		75	0.996473
109	75	25			0.996473
110	75			25	0.996473
111	75		25		0.996473
112		25		75	0.996473
129		25		75	0.996473
169		20		80	0.995493
197	20		80		0.995493
198		80		20	0.995493
212	80	20			0.995493
226		83		16	0.994512
246			16	83	0.994512
270		16		83	0.994512
290		83		16	0.994512
327		14	85		0.993533
328		14		85	0.993533
331			85	14	0.993533
337	85	14			0.993533
340			14	85	0.993533
344	85			14	0.993533
347		85		14	0.993533
379		87		12	0.992554
394	87		12		0.992554
409	14	85			0.993533
416	83	16			0.994512
455	20		80		0.995493
472	50	50			1.0
473			50	50	1.0
1584	25	75			0.996473
1612		25		75	0.996473
1626	25	75			0.996473
1629		75		25	0.996473
1667	75	25			0.996473
1690	25	75			0.996473
1695		75	25		0.996473
1699			20	80	0.995493
1700		20	80		0.995493
1983	14		85		0.993533
2004		14		85	0.993533
2023	14		85		0.993533
2083		76		23	1.0
2092		84		15	0.999986
2104	15			84	0.999986
2123		16	83		0.999991
2141		83	16		0.999991
2169		16		83	0.999991
2171	16		83		0.999991
2182		18		81	0.999994
2184		18		81	0.999994
2202	81		18		0.999994
2214	72		9	18	0.999994
2240		11		88	0.923564
2289	28	71			1.0
2296	14	85			0.993533
2299			28	71	1.0
2300	57	14	28		1.0
2301	85	14			0.993533
2303	71	14		14	0.984337
2311	40	60			1.0
2314			80	20	0.995493
2321	80	20			0.995493
2322	80	20			0.995493
2323		20		80	0.995493
2324	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain