SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16667

Length: 2088 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16667
ATGGGAACAAAGAGGGCGAAGCTTGAACAGGAAGGAGGAGGGACACACATTCCGGAAGCATCTGCTTCTGCTGCGAGTGCAGGTGAAGCTTCGGAGCAGCGAATGGCGGGTTCTGTTGATTCGACGGTGGTTGGAAATGTGGCCACTTCGAGCACGACAGGATTTCGAAAGACTGGAAATAGTGGTGTCGATAAGCTTCCAAAAGAGATGCATGAGATGAAAATCAGAGACGACAAATCTGATAATGTTGATGACAAGGAAATTGAAGCGGCAGTTGTCAACGGGAATGGAACAGAAACAGGCCACATAATTGCCACCACAATAGGTGGACGAAATGGGCAACCGAAGCAGACCATCAGTTACATGGCAGAACGGGTAGTTGGCACTGGTTCATTCGGAATTGTGTTCCAGGCAAAGTGCCTAGAAACTGGTGAACATGTTGCCATAAAGAAAGTGCTGCAGGACAAAAGATACAAAAATAGAGAACTGCAAGTTATGCGCATGCTTGACCATCCTAATATAGTTCAATTTAAGCATTGTTTCTTTTCAACGACTGATAACGATGAGCTTTACCTTAATCTTGTACTGGAGTATGTCCCTGAGACAGTTTACCGAATTTCTAAGCACTATAATAGGGTGAACCAACGGATGCCATTATTATATGTTAAACTGTATGCATACCAGATATGCCGTTCTCTAGCTTACATTCACGGTGCTGTTGGTGTTTGTCATCGTGATATAAAACCACAAAATCTCCTGGTGAATCCACACACGCATCAGTTAAAGCTTTGCGATTTTGGCAGTGCCAAAGTGTTAGTGAAAGGGGAACCAAATATATCATATATATGTTCTCGGTACTACAGAGCTCCAGAGCTTATCTTTGGAGCTACAGAGTATACTACTGCAATCGATATATGGTCATTAGGTTGTGTCCTAGCCGAACTCTTACTATCACAGCCTTTGTTTCCAGGAGAAAGTGGTGTTGATCAGCTGGTGGAGATCATTAAGGTTTTGGGGACACCAACTCGAGAGGAGATTAAGTGCATGAATCCAAATTACACAGAGTTCAAATTTCCTCAAATCAAAGCACATCCGTGGCACAAGGTATTTCATAAAAAAATGCCGCCAGAGGCAGTGGATCTTGTATCAAGGCTGCTCCAGTATTCCCCAAATCTGCGTTGCACTGCTGTGGAGGCTTGTGCACATCCTTTTTTCAATGAGTTACGGGACCCCAATACACGCTTGCCTAATGGTCGGTTGTTGCCCCCTTTGTTTAACTTCAAGCATCAAGAGTTGAAAGGAGCTTCTCCTGAACTAGTCCAGCGAATTATACCTGAACATGCAAGGAAGCACAACCTGGTATTATCAGCATAATTTTACGGTATAAGCTGAGCACTTGCACTAATTCTGTCTACAAACGTTCAGGTGATTATGCTCATGTAACACCAGTAACCAAGGCATTTCATTTTGCAAGGATGTCATCGCATTTGATTAATACTGGGGTAGTTAGCACAGCTGATTTATATTCAGATAAATGTTGTAGTGTAAATGGTATGTACAGGGCTTCTGGCAGTGCAGATCCGTGTGTATCTTTCATTCTCGATAGTTTGAATTTGTGAAATGGAGAATTGCTTGTATTCTGCCTCCTCTTCTGTAATATGGATTTCTTTTGCCTCTGGCTTGTATTTCATCAGAGTGATATCTTTATCAGTTTGCATGAAATTGCAAGCTGAGTGCAGCTTTGCCAAGAGATATTAGTTTGTGGCAGGAATGTGTTGTTTGAGTATATATGTTTTGGCAACAGCTGTCATTATCTATTGAAGGCCCAAGAGAACAGAATCGGAGGATTAAGTTAGAGAGTCATAGAATATAGAATTCCAAATTTATGTTGTGAAGTTGAAGATAACGATATGTTTTTCAAGAGATTATTATTTTCATGGTAGCCGAACAAGGCTTAGTTTGAGTGGATAACATATAAGTTCTCAGGTTTTGTATATATGCAGCTTGAATTGGATTGTATGCTACTGTGCGTCTCTTTGGTCATACAGAAAATTCTTCTGAACACGGGCAGACCATATTGTTGGTTTT

Ace file of the UniGene sp_v1.1_unigene16667

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GSK3/shaggy-like protein kinase n=1 Tax=Selaginella moellendorffii RepID=D8SX29_SELML	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Tau protein] kinase.	EC:2.7.11.26	-	0.0	91%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	tau-protein kinase activity	GO:0050321	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	91%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	91%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	91%
Blast2go	Protein kinase-like domain	IPR011009	-	91%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	91%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	91%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV52

Fln msg: your sequence is longer than subject: 458 - 424

Fln protein: MGTKRAKLEQEGGGTHIPEASASAASAGEASEQRMAGSVDSTVVGNVATSSTTGFRKTGNSGVDKLPKEMHEMKIRDDKSDNVDDKEIEAAVVNGNGTETGHIIATTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCLETGEHVAIKKVLQDKRYKNRELQVMRMLDHPNIVQFKHCFFSTTDNDELYLNLVLEYVPETVYRISKHYNRVNQRMPLLYVKLYAYQICRSLAYIHGAVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSLGCVLAELLLSQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPPEAVDLVSRLLQYSPNLRCTAVEACAHPFFNELRDPNTRLPNGRLLPPLFNFKHQELKGASPELVQRIIPEHARKHNLVLSA*

Protein Length: 459

Fln nts: _-_ATGGGAACAAAGAGGGCGAAGCTTGAACAGGAAGGAGGAGGGACACACATTCCGGAAGCATCTGCTTCTGCTGCGAGTGCAGGTGAAGCTTCGGAGCAGCGAATGGCGGGTTCTGTTGATTCGACGGTGGTTGGAAATGTGGCCACTTCGAGCACGACAGGATTTCGAAAGACTGGAAATAGTGGTGTCGATAAGCTTCCAAAAGAGATGCATGAGATGAAAATCAGAGACGACAAATCTGATAATGTTGATGACAAGGAAATTGAAGCGGCAGTTGTCAACGGGAATGGAACAGAAACAGGCCACATAATTGCCACCACAATAGGTGGACGAAATGGGCAACCGAAGCAGACCATCAGTTACATGGCAGAACGGGTAGTTGGCACTGGTTCATTCGGAATTGTGTTCCAGGCAAAGTGCCTAGAAACTGGTGAACATGTTGCCATAAAGAAAGTGCTGCAGGACAAAAGATACAAAAATAGAGAACTGCAAGTTATGCGCATGCTTGACCATCCTAATATAGTTCAATTTAAGCATTGTTTCTTTTCAACGACTGATAACGATGAGCTTTACCTTAATCTTGTACTGGAGTATGTCCCTGAGACAGTTTACCGAATTTCTAAGCACTATAATAGGGTGAACCAACGGATGCCATTATTATATGTTAAACTGTATGCATACCAGATATGCCGTTCTCTAGCTTACATTCACGGTGCTGTTGGTGTTTGTCATCGTGATATAAAACCACAAAATCTCCTGGTGAATCCACACACGCATCAGTTAAAGCTTTGCGATTTTGGCAGTGCCAAAGTGTTAGTGAAAGGGGAACCAAATATATCATATATATGTTCTCGGTACTACAGAGCTCCAGAGCTTATCTTTGGAGCTACAGAGTATACTACTGCAATCGATATATGGTCATTAGGTTGTGTCCTAGCCGAACTCTTACTATCACAGCCTTTGTTTCCAGGAGAAAGTGGTGTTGATCAGCTGGTGGAGATCATTAAGGTTTTGGGGACACCAACTCGAGAGGAGATTAAGTGCATGAATCCAAATTACACAGAGTTCAAATTTCCTCAAATCAAAGCACATCCGTGGCACAAGGTATTTCATAAAAAAATGCCGCCAGAGGCAGTGGATCTTGTATCAAGGCTGCTCCAGTATTCCCCAAATCTGCGTTGCACTGCTGTGGAGGCTTGTGCACATCCTTTTTTCAATGAGTTACGGGACCCCAATACACGCTTGCCTAATGGTCGGTTGTTGCCCCCTTTGTTTAACTTCAAGCATCAAGAGTTGAAAGGAGCTTCTCCTGAACTAGTCCAGCGAATTATACCTGAACATGCAAGGAAGCACAACCTGGTATTATCAGCATAA___TTTTACGGTATAAGCTGAGCACTTGCACTAATTCTGTCTACAAACGTTCAGGTGATTATGCTCATGTAACACCAGTAACCAAGGCATTTCATTTTGCAAGGATGTCATCGCATTTGATTAATACTGGGGTAGTTAGCACAGCTGATTTATATTCAGATAAATGTTGTAGTGTAAATGGTATGTACAGGGCTTCTGGCAGTGCAGATCCGTGTGTATCTTTCATTCTCGATAGTTTGAATTTGTGAAATGGAGAATTGCTTGTATTCTGCCTCCTCTTCTGTAATATGGATTTCTTTTGCCTCTGGCTTGTATTTCATCAGAGTGATATCTTTATCAGTTTGCATGAAATTGCAAGCTGAGTGCAGCTTTGCCAAGAGATATTAGTTTGTGGCAGGAATGTGTTGTTTGAGTATATATGTTTTGGCAACAGCTGTCATTATCTATTGAAGGCCCAAGAGAACAGAATCGGAGGATTAAGTTAGAGAGTCATAGAATATAGAATTCCAAATTTATGTTGTGAAGTTGAAGATAACGATATGTTTTTCAAGAGATTATTATTTTCATGGTAGCCGAACAAGGCTTAGTTTGAGTGGATAACATATAAGTTCTCAGGTTTTGTATATATGCAGCTTGAATTGGATTGTATGCTACTGTGCGTCTCTTTGGTCATACAGAAAATTCTTCTGAACACGGGCAGACCATATTGTTGGTTTT

Fln Alignment:

sp_v1.1_unigene16667___GNVATSSTTGFRKTGNSGVDKLPKEMHEMKIRDDKSDNVDDKEIEAAVVNGNGTETGHIIATTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCLETGEHVAIKKVLQDKRYKNRELQVMRMLDHPNIVQFKHCFFSTTDNDELYLNLVLEYVPETVYRISKHYNRVNQRMPLLYVKLYAYQICRSLAYIHGAVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSLGCVLAELLLSQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPPEAVDLVSRLLQYSPNLRCTAVEACAHPFFNELRDPNTRLPNGRLLPPLFNFKHQELKGASPELVQRIIPEHARKHNLVLS
A9NV52_______________GGVGSSRTINRLKGPVNSVDWLGREMLEMRIRDNKLDVDDEKDIEPAIVDGMGAESGHIIATTIGGRNGQPKQTISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMHMLDHPNIVALKHCFFSTTDKEELYLNLVLEYVPETVNRIARHYNRMNQRMPLIYVKLYSYQICRSLAYIHNCVGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFQKRLPPEAVDLVSRLLQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELAGIPPDTLERLIPEHARKQNLFMA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1467	20			80	0.995493
1469			20	80	0.995493
1471		80	20		0.995493
1483		83	16		0.994512
1548	88		11		0.923564
1679		6	93		0.999364
1751		6	93		0.999364
1754	93	6			0.999364
1758		6	90		0.997544
1759	3		6	86	0.994799
1761		10		90	1.0
1762			93	6	0.999364
1765	7		92		0.999532
1767	89	7		3	0.998606
1768			92	7	0.999532
1770	92		7		0.999532
1771	89	10			1.0
1775		7	92		0.999532
1777		7		92	0.999602
1778	7		92		0.999602
1945		22		77	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain