SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16665

Length: 2275 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16665
CGTCGTGACCTTGGCTATCGCCCAGAATATGCCAGTCCTATTGGTATACGCATTCCACATAGTCAGAGTTTTTGCAGCCACCTGATTGACGTCCACCGGGTCAATTGCTCTGTGTTTATTACCCAAAATTTGGGATTTTCTTCTATTTTGTTCATCAATTGCTCTGTGTTTGGTACCCATTTGGGAATTTTGGGACTTCTCTTTGATTCCATATATTGTCTACTGTGAAAACATTCCTCTCTGTGACGATAGAGATAAATTTATTCTTCCTGTATTCTCAGGCTTGTGCGATATTGTTGTCTGAGTTTTAACATCTCGAGGGTTTGCAATTTTCTGTGCCCCTTGTATCGCTGGTTAGGATTCTTTAACTTTCCCCACTCAATGGCGAACAAAGTAGAAGTCCATCCCGTGACTCTGACTGGGCTTCTAAATAATGCCTGCCAGGAGTTTCCCCAAAATAAGGCAGTCATTGTATCAGGGAAATTTGAAGTTACATATGCCGAGATGCAAAGGCTTGTAAATAGATGTGCCGTCAAGTTGAGAAATGCCGGGATTGGAAGCGGGGATGTGGTGGCTCTCACCTTTCCTAACTCTATTGAGTTCGTAATACTGTTCCTTGCGGTGATCAAGGCCAGAGCAGTTGCAGCACCACTGAATTCTGCCTACACTGAAGAGGAATTCCAATTCTACCTAGAGGATTCAGGGTCCAAAATGCTTTTACTGCCCACGGAAGGATATTTGCCGGCTGAAAAAGCCGCCACAAAGCTGGGCCTCTCAGTGGCCGCATCACAATTCTGCTTCGACACCGACAGAAACGCAACCGTCGAGTTCCACTCGAGATCGAATTTCGTGGAATCGGAGGGCAGCGAAGAGGAAGAGGTTACCGAGAACAGTATGAACCTGGAAGACGACAAAGCACTGTTTCTTCATACGTCTGGCACCACTAGCCGTCCAAAGGGAGTACCATTAACGCAAATAAATCTCGCAGCATCTACGCAACACATCGTAGACGTCTATGAACTTTCGCCCTCCGACGTGACTGTCGTTGTCTTACCGTTCTTTCACGTCCATGGTCTCGTAGCGGCGTTGCTGTCGTCCATGGTCGCCGGCGGAACCGTCGTTATTCCGTCCACCGGTCGATTCTCGGCCTCATCGTTCTGGAACGATATGAAAACCTACGGCGCCACGTGGTACACAGCGGTGCCTACCATTCACCAAATTTTGCTAGAGAGGCACCACAAGAAGCCCGAGAGCGAGTATCCAAAGCTACGATTCATCAGAAGTTGCAGCGCTTCTCTGGCTCCAGCGATAATGGAACATCTGGAGCAAGCCTTCGGCGCTCCTGTTCTTGAATCTTACGCGATGACAGAGGCTTCTCATATGATGACGTCCAATCCGTTGCCACATCGTGGTGTTCACAAACCGGGGTCCGTGGGCAAGGCGGTGGGGCAGGAATTAGGCATTCTCGACCACAACGGCGTTGTTCAGAAACCGGGATGTAGCGGCGAGGTCTGCATACGGGGTTTGAACGTGACCAAGGGTTACCAAAACAACCCAGAAGCCAATAAAACCGGTTTTCAGTTCGGTTGGTTTCACACGGGAGACCTCGGTTACATCGATAACGACGGATACCTGTTCCTCATTGGTCGGATTAAGGAGCTCATTAACCGAGGAGGAGAGAAGATATCACCAATGGAAGTAGACGCAGTGTTACTGTCACACCCTGCGGTGGCAGAGGCGGTTGCCTTTGGAGTTCCGGATGAAAAATATGGAGAGGAGATCAACGCGGCGGTGATTCCAAAGGAGGGGGATATTGTCACTGAAAGCCAAATCCAGGATTTATGCAAGAAAAATTTGGCGAGTTTCAAGGTACCGAAAAGGGTATTCATCACCGATTCTCTCCCGAAAACTGCCACCGGGAAAATCCAGAGGCGATTGGTTGCGGAACATTTCATAGCAACTGTATCGGCTGCCAAGGTTCCTAAATTTGGAGCATAACACAAATTTTCCATAGTTATGTGCTCCATTTCTATCCATTAATCTCATCTCGCTTTATATGGCGTTTACCTTCACAAGCTCATGTTAAGCGTGGCAAAGTGAAGGAATTCTTCGACTGTGACTTATTTAATATGTTCATATTAAAATAAATCGATGTTGCGTTTGGTGGAATGAAGTCTACCCGATCAATTTCAAATCTTTATTGTATCGGTAAAGCGTTTTTTAATGACCATTTTCAAAGCTTTATTGTATTCGTACAGCATTATTTTAATGCAAT

Ace file of the UniGene sp_v1.1_unigene16665

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP dependent CoA ligase, putative (EC:6.2.1.26)	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	amp dependent	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	77%
Blast2go	metabolic process	GO:0008152	Biological Process	77%
Blast2go	AMP binding	GO:0016208	Molecular Function	77%
Blast2go	o-succinylbenzoate-CoA ligase activity	GO:0008756	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	apoplast	GO:0048046	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL52

Fln msg:

Fln protein: MANKVEVHPVTLTGLLNNACQEFPQNKAVIVSGKFEVTYAEMQRLVNRCAVKLRNAGIGSGDVVALTFPNSIEFVILFLAVIKARAVAAPLNSAYTEEEFQFYLEDSGSKMLLLPTEGYLPAEKAATKLGLSVAASQFCFDTDRNATVEFHSRSNFVESEGSEEEEVTENSMNLEDDKALFLHTSGTTSRPKGVPLTQINLAASTQHIVDVYELSPSDVTVVVLPFFHVHGLVAALLSSMVAGGTVVIPSTGRFSASSFWNDMKTYGATWYTAVPTIHQILLERHHKKPESEYPKLRFIRSCSASLAPAIMEHLEQAFGAPVLESYAMTEASHMMTSNPLPHRGVHKPGSVGKAVGQELGILDHNGVVQKPGCSGEVCIRGLNVTKGYQNNPEANKTGFQFGWFHTGDLGYIDNDGYLFLIGRIKELINRGGEKISPMEVDAVLLSHPAVAEAVAFGVPDEKYGEEINAAVIPKEGDIVTESQIQDLCKKNLASFKVPKRVFITDSLPKTATGKIQRRLVAEHFIATVSAAKVPKFGA*

Protein Length: 540

Fln nts: CGTCGTGACCTTGGCTATCGCCCAGAATATGCCAGTCCTATTGGTATACGCATTCCACATAGTCAGAGTTTTTGCAGCCACCTGATTGACGTCCACCGGGTCAATTGCTCTGTGTTTATTACCCAAAATTTGGGATTTTCTTCTATTTTGTTCATCAATTGCTCTGTGTTTGGTACCCATTTGGGAATTTTGGGACTTCTCTTTGATTCCATATATTGTCTACTGTGAAAACATTCCTCTCTGTGACGATAGAGATAAATTTATTCTTCCTGTATTCTCAGGCTTGTGCGATATTGTTGTCTGAGTTTTAACATCTCGAGGGTTTGCAATTTTCTGTGCCCCTTGTATCGCTGGTTAGGATTCTTTAACTTTCCCCACTCA_-_ATGGCGAACAAAGTAGAAGTCCATCCCGTGACTCTGACTGGGCTTCTAAATAATGCCTGCCAGGAGTTTCCCCAAAATAAGGCAGTCATTGTATCAGGGAAATTTGAAGTTACATATGCCGAGATGCAAAGGCTTGTAAATAGATGTGCCGTCAAGTTGAGAAATGCCGGGATTGGAAGCGGGGATGTGGTGGCTCTCACCTTTCCTAACTCTATTGAGTTCGTAATACTGTTCCTTGCGGTGATCAAGGCCAGAGCAGTTGCAGCACCACTGAATTCTGCCTACACTGAAGAGGAATTCCAATTCTACCTAGAGGATTCAGGGTCCAAAATGCTTTTACTGCCCACGGAAGGATATTTGCCGGCTGAAAAAGCCGCCACAAAGCTGGGCCTCTCAGTGGCCGCATCACAATTCTGCTTCGACACCGACAGAAACGCAACCGTCGAGTTCCACTCGAGATCGAATTTCGTGGAATCGGAGGGCAGCGAAGAGGAAGAGGTTACCGAGAACAGTATGAACCTGGAAGACGACAAAGCACTGTTTCTTCATACGTCTGGCACCACTAGCCGTCCAAAGGGAGTACCATTAACGCAAATAAATCTCGCAGCATCTACGCAACACATCGTAGACGTCTATGAACTTTCGCCCTCCGACGTGACTGTCGTTGTCTTACCGTTCTTTCACGTCCATGGTCTCGTAGCGGCGTTGCTGTCGTCCATGGTCGCCGGCGGAACCGTCGTTATTCCGTCCACCGGTCGATTCTCGGCCTCATCGTTCTGGAACGATATGAAAACCTACGGCGCCACGTGGTACACAGCGGTGCCTACCATTCACCAAATTTTGCTAGAGAGGCACCACAAGAAGCCCGAGAGCGAGTATCCAAAGCTACGATTCATCAGAAGTTGCAGCGCTTCTCTGGCTCCAGCGATAATGGAACATCTGGAGCAAGCCTTCGGCGCTCCTGTTCTTGAATCTTACGCGATGACAGAGGCTTCTCATATGATGACGTCCAATCCGTTGCCACATCGTGGTGTTCACAAACCGGGGTCCGTGGGCAAGGCGGTGGGGCAGGAATTAGGCATTCTCGACCACAACGGCGTTGTTCAGAAACCGGGATGTAGCGGCGAGGTCTGCATACGGGGTTTGAACGTGACCAAGGGTTACCAAAACAACCCAGAAGCCAATAAAACCGGTTTTCAGTTCGGTTGGTTTCACACGGGAGACCTCGGTTACATCGATAACGACGGATACCTGTTCCTCATTGGTCGGATTAAGGAGCTCATTAACCGAGGAGGAGAGAAGATATCACCAATGGAAGTAGACGCAGTGTTACTGTCACACCCTGCGGTGGCAGAGGCGGTTGCCTTTGGAGTTCCGGATGAAAAATATGGAGAGGAGATCAACGCGGCGGTGATTCCAAAGGAGGGGGATATTGTCACTGAAAGCCAAATCCAGGATTTATGCAAGAAAAATTTGGCGAGTTTCAAGGTACCGAAAAGGGTATTCATCACCGATTCTCTCCCGAAAACTGCCACCGGGAAAATCCAGAGGCGATTGGTTGCGGAACATTTCATAGCAACTGTATCGGCTGCCAAGGTTCCTAAATTTGGAGCATAA___CACAAATTTTCCATAGTTATGTGCTCCATTTCTATCCATTAATCTCATCTCGCTTTATATGGCGTTTACCTTCACAAGCTCATGTTAAGCGTGGCAAAGTGAAGGAATTCTTCGACTGTGACTTATTTAATATGTTCATATTAAAATAAATCGATGTTGCGTTTGGTGGAATGAAGTCTACCCGATCAATTTCAAATCTTTATTGTATCGGTAAAGCGTTTTTTAATGACCATTTTCAAAGCTTTATTGTATTCGTACAGCATTATTTTAATGCAAT

Fln Alignment:

sp_v1.1_unigene16665___MANKVEVHPVTLTGLLNNACQEFPQNKAVIVSGKFEVTYAEMQRLVNRCAVKLRNAGIGSGDVVALTFPNSIEFVILFLAVIKARAVAAPLNSAYTEEEFQFYLEDSGSKMLLLPTEGYLPAEKAATKLGLSVAASQFCFDTDRNATVEFHSRXXXXXXXXXXXXXXXXXXXXXXDDKALFLHTSGTTSRPKGVPLTQINLAASTQHIVDVYELSPSDVTVVVLPFFHVHGLVAALLSSMVAGGTVVIPSTGRFSASSFWNDMKTYGATWYTAVPTIHQILLERHHKKPESEYPKLRFIRSCSASLAPAIMEHLEQAFGAPVLESYAMTEASHMMTSNPLPHRGVHKPGSVGKAVGQELGILDHNGVVQKPGCSGEVCIRGLNVTKGYQNNPEANKTGFQFGWFHTGDLGYIDNDGYLFLIGRIKELINRGGEKISPMEVDAVLLSHPAVAEAVAFGVPDEKYGEEINAAVIPKEGDIVTESQIQDLCKKNLASFKVPKRVFITDSLPKTATGKIQRRLVAEHFIATVSAAKVPKFGA
B8LL52_______________MASKGEVYPLTLTALLNNACHEFPQHKAVIVSGKFEVTYAELQRLVNRCAAKLRNAGIGSGDVVALTFPNSIEFVIVFLAVIRARAVAAPLNSTYTEEEFEFYLEDSGSKMLIVPTEGYSSAERAATKLGLSVAASQFCLDTDRNATVEFHPRSNFVASEGSEEVSETELNLE--DDKALFLHTSGTTSRPKGVPLTQLNLAASTQHIKDVYELSPSDLTVIVLPLFHVHGLLAALLSSMVAGGTVVIPSAGRFSASSFWNDVKTYGATWYTAVPTIHQILLDRHHAKPESEYPKLRFIRSCSASLAPAILEHLEQTFGAPVLEAYAMTEASHLMTSNPLPHRGVHKSGSVGKAVGQELAILDHSGVIQKPGCSGEVCIRGLNVTKGYQNNPEANKTAFKFGWFHTGDLGYLDNDGYLFLIGRIKELINRGGEKISPMEVDAVLLLHPAVAEAVAFAVPDEKYGEEINAAVVTKEGATVTESEIRGFCKKNLASFKIPKRVFITESIPKTATGKVQRRLVAEHFIATVSAAKVPKFGA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
766		10		90	0.90298
777	10			90	0.90298
2178	88	11			0.999937
2187	88			11	0.923564
2189		11		88	0.923564
2190			11	88	0.923564
2191		87		12	0.992554
2193	85		14		0.993533
2194	85			14	0.993533
2195			14	85	0.993533
2196	14	85			0.993533
2197			14	85	0.993533
2199			14	85	0.993533
2201		16		83	0.994512
2202	16		16	66	0.988813
2204		16		83	0.994512
2205	83	16			0.994512
2206	16			83	0.994512
2207	16	83			0.994512
2211	83	16			0.994512
2213	83	16			0.994512
2224	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain