SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16661

Length: 920 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16661 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Populus trichocarpa RepID=B9GSL2_POPTR	-	-	8.0e-16	35%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	lipid transfer protein	-	-	5.13787e-16	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	5.13787e-16	51%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	5.13787e-16	51%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	5.13787e-16	51%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
593	88		11		0.923564
636	37		62		1.0
899	20	20		60	0.99255
900	60			40	1.0
901	20	20		60	0.99255
904			75	25	0.996473
906	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain