SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16655

Length: 3256 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16655
ATGGGGAAGGTTAATTAATTTAACAAGCAGGTAACGGACCTCGCCAAAGTTAATCGATTTAACACGTCGTGACCTTGGCTGTCATCTCAATCCGAGTGGGAAACTTTGTAGATCCTGGATACTTTATTGTTTTGCAGGGTGGATCGAGGATGATTTCATGAAATCCAACAATCTCTGGAATTTCTTAACGCACACTATCTGATTGCACAGATTCACTCCACTCCATTTTGTCCCCTTCGTCTTTATTACCAAATTACCAATGCCCGAAAGTAATTCATTTCTCTGGTGCCCTGGGCTTCCAGACTGGTTCAAGATTGAGCCCATCAGCCCCCTGATAGAATTAACAGAAACCCATGTTGATTAAGTGATACCCAGTTTGATATAAAGGACACGAATTTGAGCTGTATTCCCTTACTGCGCACATCGCTACAGTCTCCATGGCGCCAAAATGGGTTCAGGCTTGAGTATTTCGTCCTGTTATAAAATTACAAAATCCCCAGGATGGATTTTTTGATATAAAAGACACCCGTTTGAAAACGAGACATACCCATCATCAATTTCTTATTTATGACATTTTTGGACCATTAGGCCCTCTCTGAGGTCCAAAAATTTACTGTTGTGTGTACTCTGTGTAGAAATATCAGGACAAGCCAGTTTTGCTACCCATCTGGCTCTTGTGGAAGGAGAGCATGAGGGCCATCTGTGCCCCATCATTTAAGGACATGGGCCCTCTGTTAGGGAAGGGGGAATCCTGCTGACCTTTTTTCTGTAACATTAACAACGGTATTTTTTAGCACCCAGTAGGCTATTTTGAATGCCAAATATCTGTATTTCTTCATTACTATTTACTTATGTACCCTTTGGTTTTACTCGACATTAAGATTCATTCAGAATCATATGAAATTTTTGGTTGACGATCCTTATCTGGGTGCCTCTGATCTCTGCACCATAGAGGCGTTCTTGGGCCTACACATCTGTTGTATGATTTATTTTTGATCTGGAAAGCGTGAATCCTTGGCAGTGATTCTTTGTTTAGGACAAGCAGGGGGTTGCAGAAAAACAACCTTTTTTTTCGGCGTTTGTAACCTGGTTTGGTCCTGGAGTGCATATTCAGTATCCTCAGGGCCCTTAGAATGGGGTCCTGTTTATCTTCTGATGGGAGGAGTCTGAGTACTCTTCCTCGGTCTGCTTCCACACCTAGAGCCAGCGTGAGGAGGAGGAGGAGAAACAAGAGAAATATGTCTAACATGCCGAATTCGGCTGCTGAAGAGAAAGCATATGAGCAGATCGGTAGGATTCCTGGCAGGATGTTTGCCAATGGTGCCAGCAATGTTGCTTGCATGTTTACGCAGCAAGGCCGAAAGGGAACCAATCAGGATGCCATGCTTGTCTGGGAGGACTTCGGTTCTAGAAGGGACACGGTTTTCTGTGGAGTATTTGATGGGCATGGCCCTTTTGGCCATCTAGTTGCCAAGAAGGTGAGGGATTCACTGCCATCAAAGCTGAGCAGTCAATGGGAAGCAGAGATGAAGGATGATGACAGCATCAAAGAGGCTAATAGCACTGTGGGAAGCATGAATTCTGAGGAATCACTATCAGTTACCATGGACGATGAATGGAGGGAGTCAACAGATATGGAAGAGAGGGAGAAGTGCCCAGAAATATTTTTGACATTGAAAGAGTCATTTCTGAAAGCCTTCAAAGTGATGGATAAGGAGTTGAGGCTGCATCCTTCAATAGATTGCTTTTGTAGTGGAACTACTGCAGTAACGTTGGTGAAGCAGGGACAAGACTTGGTAATCGGAAATGTTGGAGACTCAAGAGCAGTTCTGGGTACGAGAGTTCAAGACAATTCATTGTCTGCAGTGCAGTTGACTGTGGATTTGAAACCCAATCTCCCAAGGGAAGCTGAGAGGATTCGACAATGCAAAGGGCGAGTTTTTGCCTTGCATGATGAGCCTGAGGTATCACGTGTTTGGTTGCCTCATAATGATTCCCTGGGCTGGCTATGGCTAGAGCTTTTGGTGATTTCTGTCTGAAGGACTTTGGCCTGATCTCTGTGCCTGATGTCTCTTACCATCGTTTAACTGAAAGAGATGAATTCATTGTACTGGCTACGGATGGGGTCTGGGATGTATTGTCTAATAAGGAGGTTGTGGAAATTGTGGCATCAGCACCTTCTCAAACAACTGCAGCCAGAGCTTTGGTGGAGTATGCTGTTCGAGCATGGAGGTTAAAATATCCAACTTCCAAAGTGGATGATTGTGCAGCGGTCTGTCTTTTCCTCAATAATTCTCTACCATCTGAGCCAAAATCAAAAACTGCAGTGGCACAGAGCCTTAGTAGTCAAGCAGTGCCACAACAGATCACTTCAGTGTCAGCTACAGATTCACGTAAAGATTTGGACAAGAACACAGAAGACTTCAGTGAGACAAATAACCCCACTTTAGAGCGTGCAAACACAGTCAGGAATGCTAATGATCTGAATGATGTATCTCAAAATTTAAACAGAGTCAAGAGCTCCAAGGAACCGAAGGGCCCAGAGAGAACACAATCCCAGAGAAAACTTGCTGAGTGTATTTCCACTAGTGATGATGAGGAATGGTCTGCTCTTGATGGTGTTACAAGGGTGAACTCTCTTCTTAATCTTCCCAGGTTTTTGACGGGAGACAAAAAGGTTGGAGTACTGAGGAAGTGGCTTTGAATCCTCTCAGATAAATATCAGGTTTGGGAGCCTCAATGGGCTCAATTGTCAGTTTTTAAATCGTGTGTCCAACTTGCTTTTGTTGGACTCGGATGGTATCTTATAAAAGAATTTCTTGTGAACAGTGTCTTTGTAAGAAAAAATATAGTTTCATCTCTTACTCTAGGAAAATCAGTTGAAAAAATAATGACACAACCTTTTTATTACTTTAGGTTCTGTGTTGTTTTGAATTATGATTAAGGAGTAATGGAGCAGGGAATGCCTGAATATGTTATTTCACTGCATGGACAAGTGGGTTTCAGATACAAGCTACAAAACTTTCTGGCTGTCCCGGTCCTCTTTCTGGCTGTCCCGGTCCTAGAAATTGTTGTTGCTCTGTCTTGACTAGTAGATTCAATACATGTTATCCTACTAGCTTGACGAGGATGCAAATACTGAATTCTAACTCATAGAAATAGTGTTGTCTTTTATGGGAAAATATTTTAGGGTAGTTGCTTATTGGTAAGCCTTTTTTGGTCAGGAAATTTTGTCGGGCAGTCTATACCATGATTT

Ace file of the UniGene sp_v1.1_unigene16655

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RM68_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein phosphatase-	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	0.0	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	81%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: Overlapping hits, possible frame ERROR between 2003 and 1997,

Fln protein: MGSCLSSDGRSLSTLPRSASTPRASVRRRRRNKRNMSNMPNSAAEEKAYEQIGRIPGRMFANGASNVACMFTQQGRKGTNQDAMLVWEDFGSRRDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSSQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESTDMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPSIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVSRVWLPHNDxxxxAMARAFGDFCLKDFGLISVPDVSYHRLTERDEFIVLATDGVWDVLSNKEVVEIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAAVCLFLNNSLPSEPKSKTAVAQSLSSQAVPQQITSVSATDSRKDLDKNTEDFSETNNPTLERANTVRNANDLNDVSQNLNRVKSSKEPKGPERTQSQRKLAECISTSDDEEWSALDGVTRVNSLLNLPRFLTGDKKVGVLRKWL*

Protein Length: 525

Fln nts: ATGGGGAAGGTTAATTAATTTAACAAGCAGGTAACGGACCTCGCCAAAGTTAATCGATTTAACACGTCGTGACCTTGGCTGTCATCTCAATCCGAGTGGGAAACTTTGTAGATCCTGGATACTTTATTGTTTTGCAGGGTGGATCGAGGATGATTTCATGAAATCCAACAATCTCTGGAATTTCTTAACGCACACTATCTGATTGCACAGATTCACTCCACTCCATTTTGTCCCCTTCGTCTTTATTACCAAATTACCAATGCCCGAAAGTAATTCATTTCTCTGGTGCCCTGGGCTTCCAGACTGGTTCAAGATTGAGCCCATCAGCCCCCTGATAGAATTAACAGAAACCCATGTTGATTAAGTGATACCCAGTTTGATATAAAGGACACGAATTTGAGCTGTATTCCCTTACTGCGCACATCGCTACAGTCTCCATGGCGCCAAAATGGGTTCAGGCTTGAGTATTTCGTCCTGTTATAAAATTACAAAATCCCCAGGATGGATTTTTTGATATAAAAGACACCCGTTTGAAAACGAGACATACCCATCATCAATTTCTTATTTATGACATTTTTGGACCATTAGGCCCTCTCTGAGGTCCAAAAATTTACTGTTGTGTGTACTCTGTGTAGAAATATCAGGACAAGCCAGTTTTGCTACCCATCTGGCTCTTGTGGAAGGAGAGCATGAGGGCCATCTGTGCCCCATCATTTAAGGACATGGGCCCTCTGTTAGGGAAGGGGGAATCCTGCTGACCTTTTTTCTGTAACATTAACAACGGTATTTTTTAGCACCCAGTAGGCTATTTTGAATGCCAAATATCTGTATTTCTTCATTACTATTTACTTATGTACCCTTTGGTTTTACTCGACATTAAGATTCATTCAGAATCATATGAAATTTTTGGTTGACGATCCTTATCTGGGTGCCTCTGATCTCTGCACCATAGAGGCGTTCTTGGGCCTACACATCTGTTGTATGATTTATTTTTGATCTGGAAAGCGTGAATCCTTGGCAGTGATTCTTTGTTTAGGACAAGCAGGGGGTTGCAGAAAAACAACCTTTTTTTTCGGCGTTTGTAACCTGGTTTGGTCCTGGAGTGCATATTCAGTATCCTCAGGGCCCTTAGA_-_ATGGGGTCCTGTTTATCTTCTGATGGGAGGAGTCTGAGTACTCTTCCTCGGTCTGCTTCCACACCTAGAGCCAGCGTGAGGAGGAGGAGGAGAAACAAGAGAAATATGTCTAACATGCCGAATTCGGCTGCTGAAGAGAAAGCATATGAGCAGATCGGTAGGATTCCTGGCAGGATGTTTGCCAATGGTGCCAGCAATGTTGCTTGCATGTTTACGCAGCAAGGCCGAAAGGGAACCAATCAGGATGCCATGCTTGTCTGGGAGGACTTCGGTTCTAGAAGGGACACGGTTTTCTGTGGAGTATTTGATGGGCATGGCCCTTTTGGCCATCTAGTTGCCAAGAAGGTGAGGGATTCACTGCCATCAAAGCTGAGCAGTCAATGGGAAGCAGAGATGAAGGATGATGACAGCATCAAAGAGGCTAATAGCACTGTGGGAAGCATGAATTCTGAGGAATCACTATCAGTTACCATGGACGATGAATGGAGGGAGTCAACAGATATGGAAGAGAGGGAGAAGTGCCCAGAAATATTTTTGACATTGAAAGAGTCATTTCTGAAAGCCTTCAAAGTGATGGATAAGGAGTTGAGGCTGCATCCTTCAATAGATTGCTTTTGTAGTGGAACTACTGCAGTAACGTTGGTGAAGCAGGGACAAGACTTGGTAATCGGAAATGTTGGAGACTCAAGAGCAGTTCTGGGTACGAGAGTTCAAGACAATTCATTGTCTGCAGTGCAGTTGACTGTGGATTTGAAACCCAATCTCCCAAGGGAAGCTGAGAGGATTCGACAATGCAAAGGGCGAGTTTTTGCCTTGCATGATGAGCCTGAGGTATCACGTGTTTGGTTGCCTCATAATGATxxxxxxxxxxxxGCTATGGCTAGAGCTTTTGGTGATTTCTGTCTGAAGGACTTTGGCCTGATCTCTGTGCCTGATGTCTCTTACCATCGTTTAACTGAAAGAGATGAATTCATTGTACTGGCTACGGATGGGGTCTGGGATGTATTGTCTAATAAGGAGGTTGTGGAAATTGTGGCATCAGCACCTTCTCAAACAACTGCAGCCAGAGCTTTGGTGGAGTATGCTGTTCGAGCATGGAGGTTAAAATATCCAACTTCCAAAGTGGATGATTGTGCAGCGGTCTGTCTTTTCCTCAATAATTCTCTACCATCTGAGCCAAAATCAAAAACTGCAGTGGCACAGAGCCTTAGTAGTCAAGCAGTGCCACAACAGATCACTTCAGTGTCAGCTACAGATTCACGTAAAGATTTGGACAAGAACACAGAAGACTTCAGTGAGACAAATAACCCCACTTTAGAGCGTGCAAACACAGTCAGGAATGCTAATGATCTGAATGATGTATCTCAAAATTTAAACAGAGTCAAGAGCTCCAAGGAACCGAAGGGCCCAGAGAGAACACAATCCCAGAGAAAACTTGCTGAGTGTATTTCCACTAGTGATGATGAGGAATGGTCTGCTCTTGATGGTGTTACAAGGGTGAACTCTCTTCTTAATCTTCCCAGGTTTTTGACGGGAGACAAAAAGGTTGGAGTACTGAGGAAGTGGCTTTGA___ATCCTCTCAGATAAATATCAGGTTTGGGAGCCTCAATGGGCTCAATTGTCAGTTTTTAAATCGTGTGTCCAACTTGCTTTTGTTGGACTCGGATGGTATCTTATAAAAGAATTTCTTGTGAACAGTGTCTTTGTAAGAAAAAATATAGTTTCATCTCTTACTCTAGGAAAATCAGTTGAAAAAATAATGACACAACCTTTTTATTACTTTAGGTTCTGTGTTGTTTTGAATTATGATTAAGGAGTAATGGAGCAGGGAATGCCTGAATATGTTATTTCACTGCATGGACAAGTGGGTTTCAGATACAAGCTACAAAACTTTCTGGCTGTCCCGGTCCTCTTTCTGGCTGTCCCGGTCCTAGAAATTGTTGTTGCTCTGTCTTGACTAGTAGATTCAATACATGTTATCCTACTAGCTTGACGAGGATGCAAATACTGAATTCTAACTCATAGAAATAGTGTTGTCTTTTATGGGAAAATATTTTAGGGTAGTTGCTTATTGGTAAGCCTTTTTTGGTCAGGAAATTTTGTCGGGCAGTCTATACCATGATTT

Fln Alignment:

sp_v1.1_unigene16655___MGSCLSSDGRSLSTLPXXXXXXXXXXXXXXXXXXXXXXXXXXAAEEKAYEQIGRIPGRMFANGASNVACMFTQQGRKGTNQDAMLVWEDFGSRRDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSSQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESTDMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPSIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVSRVWLPHNDSxxLAMARAFGDFCLKDFGLISVPDVSYHRLTERDEFIVLATDGVWDVLSNKEVVEIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAAVCLFLNNSLPSEPKSKTAVAQSLSSQAVPQQITSVSATDSRKDLDKNTEDF---SETNNPTLERANTVRNANDLNDVSQNLNRVKSSKEPKGPERTQSQRKLAECISTSDDEEWSALDGVTRVNSLLNLPRFLTGDKKVGVLRKWL
B8LLH8_______________MGSCLSTDGRSLSTLPRSASTPRASVRRRRKNKRNMSNMPNSAAEAKADEQISRIPGRMFGNGASNVACMFTQQGRKGTNQDAMLVWEDFGSRKDTVFCGVFDGHGPFGHLVAKKVRDSLPSKLSNQWEAEMKDDDSIKEANSTVGSMNSEESLSVTMDDEWRESADMEEREKCPEIFLTLKESFLKAFKVMDKELRLHPTIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVSRVWLPHNDSxxLAMARAFGDFCLKDFGLIAVPDVSYRRLTERDEFIVLASDGVWDVLSNKEVVDIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAVVCLFLNNSLPSEPKSKTALAQGPSTQAVPKEITSVSATDSREDSENKTEDFLIDSETNTPTLERANTVRNVNDLNEASQNLNRVKSSKELKCPERTQSQRKLAECISTGDDEEWSALDGVTRVNSLLNLPRFLTGDRKVGVLRKWL

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
550	85		14		0.993533
553	85		14		0.993533
555		85	14		0.993533
557	85	14			0.993533
558		14		85	0.993533
562			14	85	0.993533
563			14	85	0.993533
564	85	14			0.993533
566			14	85	0.993533
568	85	14			0.993533
569	16			83	0.994512
570		16	83		0.994512
571	83			16	0.994512
589	50		50		1.0
835		28		71	1.0
1154	20			80	0.995493
1285	83		16		0.994512
1520			90	10	0.90298
1545	88		11		0.923564
2011		33		66	0.997452
2013		14		85	0.993533
2014	14		85		0.993533
2015		14	85		0.993533
2358	14		85		0.993533
2774		10		90	0.90298
2791		16		83	0.999991
2891	85	14			0.993533
2892	85		14		0.993533
2894	85	14			0.993533
2895	85		14		0.993533
2900	85	14			0.993533
2901		85		14	0.993533
2902	85			14	0.993533
2903	85		14		0.993533
2904		85	14		0.993533
2907			14	85	0.993533
2909		14		85	0.993533
2910	14			85	0.993533
2911	85	14			0.993533
2913		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1211	1225	GAG GAG GAG GAG GAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain