SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16646

Length: 928 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L24, putative; K02896 large subunit ribosomal protein L24e	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	82%
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	nucleolus	GO:0005730	Cellular Component	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L24e-related	IPR000988	-	82%
Blast2go	TRASH	IPR011017	-	82%
Blast2go	Ribosomal protein L24e domain	IPR023441	-	82%
Blast2go	Ribosomal protein L24e, conserved site	IPR023442	-	82%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
47	83	16			0.994512
51		83	16		0.994512
53		16		83	0.994512
55		16	83		0.994512
56	83			16	0.994512
393		16	83		0.994512
398		16		83	0.994512
401			16	83	0.994512
405	83			16	0.994512
407	20		80		0.995493
408		20	80		0.995493
414		20		80	0.995493
523	88	11			0.923564
524	88			11	0.923564
527	88			11	0.923564
528		11	88		0.923564
530	88	11			0.923564
531		88		11	0.923564
533	11			88	0.923564
907	20		20	60	0.99255
908	33	66			0.997452
910	33		66		0.997452
912	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain