SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16640

Length: 1925 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16640

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UXS6; NAD-dependent epimerase/dehydratase family protein	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	dtdp-glucose 4-6-	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	91%
Blast2go	D-xylose metabolic process	GO:0042732	Biological Process	91%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	91%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	91%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD0

Fln msg:

Fln protein: MAAADSSNGATTNAGSQTVPRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKMTENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK*

Protein Length: 353

Fln nts: ATGGGGGTCGATTAGAGGTCTTATTTTGGAAACGTATGTTTACATTTAATGAGTAATTCACTGTCGGGGTTCATTCCTCCGTCAGATCTGATATTTAATAGCTCTAAGGGCCTCGCAAGATCTCTGGATTAATCTGGTGGATCGGAGGATTTGTGCTATATTGTTGCAGGTAGAAGACGAGAGTGCTTGACG_-_ATGGCTGCCGCTGATTCATCAAATGGAGCTACTACCAATGCTGGTTCTCAGACGGTTCCTAGGCCTCCTCCAACTCCCTCGCCCTTACGTTACTCGAAATTCTCACAGGCAAAACTGCGAATTCTAGTGACAGGGGGAGCTGGCTTCATTGGATCTCATTTGGTAGATCGATTGATGGAATCTGGCAACAATGAGGTGATTGTTGCTGACAACTTCTTTACCGGATCAAAAGATAACCTCAGGAAATGGATTGGGCATCCGAATTTTGAACTCATTCGGCATGATGTGACTGAGACTCTGTTGGTAGAAGTGGATCAGATCTATCATTTGGCTTGCCCAGCATCACCTATCTTCTATAAATATAATCCTGTGAAGACAATAAAGACAAACGTGATTGGCACATTGAATATGTTGGGGCTTGCCAAGCGAGTTGGTGCAAGAATTTTGTTGACCTCAACATCTGAAGTCTATGGTGACCCTCTTGAGCATCCACAAAAGGAGGAATATTGGGGTAATGTTAACCCAATTGGAGTAAGAAGCTGCTATGATGAAGGAAAGCGTGTGGCAGAAACATTAATGTTTGACTATCACAGACAGCATGGTTTAGAGATTCGCATTGCTCGAATTTTCAATACTTATGGTCCTCGCATGAACATTGATGATGGACGTGTTGTTAGCAATTTCATTGCACAAGCACTCAGAGGTGAAGAACTGACAGTGCAAGCTCCTGGCACTCAGACCCGCAGCTTCTGCTACGTTTCTGACATGGTTGATGGCCTAATCAGACTTATGGAAGGGGAGAATACTGGGCCTATTAATCTTGGGAACCCAGGAGAATTCACAATGTTGGAACTCGCTGAAGCTGTGAAGGAGCTCATAGAGCCTTCTGCTCAGTTGAAGATGACTGAAAATACTCCAGATGATCCACGGATGAGGAAGCCTGACATAACGAAGGCGAAAACCCTTCTTGGATGGGAACCCAAGGTCTCTCTACGTGAAGGCCTACCCCGTATGGCTGAAGATTTCCGCCTGCGGTTAAATGTTCCAAAGAAGTGA___GCAGTTGCAAGGCTAGACATAATGAATGAGCCTTCCTGGATGGCTCCAATAACATTCACTTGCAATGGCAAGGGGTGGGATTTTTTTTCTTCTTTTAAATGCAGTGGATGCTTTCTTTTACCAAAAAGGAATGGATGTTGAAAAATGAGAGGATTCTAAAGCGGAAAGGTTTTGGTTTTTTTCTCACTGCTCTTAAGATTAGAAGATTTTAGCTTTGTCTCATGATATCTAAAATAGTGTAGCTAGAGAATTTGTATCTAGGGCAATAGGTTGTGAATTCGCTTACAGAGTGAAAACACCGTTCGAAGGCAATCAACCAATAAAATATTGCTTTGATTGTCTCATTTCTGCAATTACCTTTCCTTCTGTGTAAGCTTCTGAAATGTGCTAATAGATAAGTATTTATCAGATTTGCCATTTCTTGGATGTAATGGCAGTTGACTGCTGAGTTTGTATCCCCTTTCGAAGTGTTCTATTGCTCTAGATGTTATAGTATTTTGGGTTGTTATTACTTCCTAAGTTGTGAGGGCGTGTGGCTGCTACTGCGGTTATGGAATTATAAACCTTGACAACATAGATGAGTGAAATTACTGAGAACAAACTTAAAATGGAGAGTTTCCCATGTAGCTTTTGGTAAACTAGGTGAACTACATATTAATACAATAAAAAATTTTTTT

Fln Alignment:

sp_v1.1_unigene16640___MAAADSSNGATTNAGSQTVXXXXXXXXXLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKMTENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK
A9NUD0_______________MAAADSSNGATTNASSQAVPRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKITENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
549	87	12			0.992554
567		12		87	0.992554
660		14		85	0.993533
738		16		83	0.994512
945		50		50	1.0
1005		47		52	1.0
1169		15	84		0.999986
1170	84		15		0.999986
1172		15	84		0.999986
1174			84	15	0.999986
1175	84		15		0.999986
1179		84		15	0.999986
1180	84			15	0.999986
1181	84		15		0.999986
1436			14	85	0.993533
1437			14	85	0.993533
1438		14		85	0.993533
1440		88	11		0.923564
1558			80	19	1.0
1654	77		22		1.0
1663	2	4		92	0.987114
1735			50	50	1.0
1741		16	83		0.994512
1769	25	75			0.996473
1822	25	75			0.996473
1824			25	75	0.996473
1826	75		25		0.996473
1921	33			66	0.997452
1923	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain