SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16634

Length: 1053 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S6 family protein [Arabidopsis thaliana] dbj\|BAB01802.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM67031.1\| unknown [Arabidopsis thaliana] dbj\|BAC42712.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50729.1\| unknown protein [	-	-	1.0e-27	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	ribosomal protein s6 family protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	81%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	81%
Blast2go	rRNA binding	GO:0019843	Molecular Function	81%
Blast2go	ribosome	GO:0005840	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S6	IPR000529	-	0.0	81%
Blast2go	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	0.0	81%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
552	87			12	0.992554
563	87		12		0.992554
630	90	10			0.90298
631	90		10		0.90298
633	90	10			0.90298
784		18		81	1.0
892	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
610	623	GAT GAT GAT GAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain