SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16621

Length: 1015 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16621

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0653200 protein n=4 Tax=Oryza sativa RepID=Q6H8G6_ORYSJ	-	-	1.0e-31	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	blue copper protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	70%
Blast2go	copper ion binding	GO:0005507	Molecular Function	70%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Blast2go	Blue (type 1) copper domain	IPR000923	-	70%
Blast2go	Plastocyanin-like	IPR003245	-	70%
Blast2go	Cupredoxin	IPR008972	-	70%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
484	16		83		0.994512
500		16		83	0.994512
502		16		83	0.994512
508	14			85	0.993533
512			14	85	0.993533
513		85	14		0.993533
517	14		85		0.993533
535		18		81	1.0
538		19		80	1.0
562	14		85		1.0
659	91		8		0.999807
913	5			94	0.9982
960		8		91	0.999766
984	20			80	0.995493
985	20			80	0.995493
986			20	80	0.995493
989		25		50	0.995533

SSRs (tot: 1)

Start position	End position	Sequence	Length
713	726	CAA CAA CAA CAA CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain