SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16609

Length: 1100 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16609

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T0U7_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	at3g62770 f26k9_200	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to starvation	GO:0042594	Biological Process	87%
Blast2go	senescence	GO:0010149	Biological Process	87%
Blast2go	autophagy	GO:0006914	Biological Process	87%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	87%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	87%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	87%
Blast2go	WD40 repeat, subgroup	IPR019781	-	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRE8

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 290 - 403

Fln protein: MATATTVSPPSSTTSPMLDPSPDPNPNSPSSTETASEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSG

Protein Length: 291

Fln nts: ATGGGGGACGATAAAAGGAAAGAGAAAGCACGTAATGGGATAATCGTAAAAGCGTACAAAGGAAGCGAAGCCGCCGAAGAGAACACAGAACCGGGGTTGGGCTTTGTCATGTTTTGATATGTGAATTTGTGAGGGTCTCTTGGGGTTCTTCCATTTTCAGGGTCTCGGTATTTTTTCCTTCACAGATCGTTCTTCAGTATTGCGGGCAAGGTGATTGCCCAATTCATTA_-_ATGGCGACGGCAACGACTGTTTCACCGCCAAGCAGTACTACTTCCCCTATGCTTGACCCATCTCCCGATCCAAATCCCAATTCGCCGTCTTCAACAGAGACTGCCAGTGAAAAATCCTCATTGCTCTACGTATCATTCAACCAGGACTTCGGTTGCTTTGCCTGTGGCACTGAGCAAGGTTTCCAGGTCTATAACTGCGATCCGTTCAGAGAAACCTTTAGAAGAGACTTCAACAATGGTGGTATTGGGGTTGTGGAGATGTTATTCCGATGTAATATTTTGGCCCTCGTGGGCGGGGGTTCGAATCCCCAGTACCCTCCCAATAAGGTCATGATCTGGGATGATCATCAGAGCCGCTGTATTGGGGAATTATCGTTCAGGTCTGAGGTTCGAGCCGTGAAGCTGAGACGGGATCGGATTGTGGTGGTGTTGGAGCACAAGATTTATGTGTACAATTTCGTGGATTTGAAGCTATTGCATCAGATTGAGACGATGGCAAACCCTAAGGGCTTGTGTGCTGTTTCTCATGCTCCCAATAGCTTCGTGTTGGCCTGCCCAGGCTTGCACCGTGGGCAGATGAGAGTCGAGCACTATGGCCTCAAGAGGACCAAATTTATAACTGCCCATGATTCTCGCATCGCCTGCTTTGCGCTCACCCTCGATGGCAGCCTCCTTGCTACTGCTAGTACAAAGGGGACCCTTATAAGGATCTTCAACACCCTAGACGCCACTCGATTGCAAGAGGTTCGTAGAGGTGCTGATAGAGCAGAAATCTATAGTCTGGCCTTCTCTTCCAGTCATCAATGGCTGGCAGTTTCAAGCGACAAGGGAACAATTCACATTTTTGGCCTCAATGTACCAAGGTCAGGAG

Fln Alignment:

sp_v1.1_unigene16609___ETASEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSG
B8LRE8_______________ETANEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCCVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATSSTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSNHQWLAVSSDKGTIHIFGLNVPRTG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
501		20		80	0.995493
532	16	83			0.994512
562	12			87	0.992554
957	16		83		0.994512
1071	66			33	0.997452
1072	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain