SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16606

Length: 1634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16606

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase cdc2 homolog B n=5 Tax=core eudicotyledons RepID=C5DB66_VITVI	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	cyclin-dependent kinase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	86%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAZ1

Fln msg:

Fln protein: MDGYEKMDKVGEGTYGKVYMARDKKTGQLVALKKTRLENDGEGIPPTALREISLLQMLSQDIYIVRLLDVKHTENKLGKPLLYLVFEYMESDLKKYIDSYRRSHTKMPPSVIKSFMYQLCRGVAYCHSRGVMHRDLKPHNLLVDKEKGVLKIADLGLGRAFTVPVKKYTHEIVTLWYRAPEVLLGATHYSLPVDIWSVGCIFAEMSRMQALFTGDSEVQQLMNIFRFLGTPNEEVWPGVTKLKDWHIYPQWNPQDISCAVPDLEPSGLNLLSEMLVYEPSKRISAKKALEHPYFDDLDKSQF*

Protein Length: 304

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGTCATTTGTGTTACAGATCTTGCAATCGTTTATTTTGTTCGTCCCACCCATATCTCTGAACACCGGAAGAATAGCA_-_ATGGATGGTTATGAGAAAATGGATAAAGTGGGAGAAGGAACTTATGGGAAGGTGTACATGGCCAGGGACAAGAAAACGGGGCAACTGGTCGCCCTTAAAAAGACCAGGCTAGAGAACGATGGTGAGGGAATTCCTCCCACTGCCCTCCGGGAGATTTCTCTTCTGCAGATGCTTTCTCAGGATATCTACATTGTAAGGCTGTTAGATGTGAAGCACACTGAGAACAAGCTTGGGAAGCCCCTTCTGTACTTAGTTTTTGAGTACATGGAATCTGATCTCAAGAAGTACATCGATAGTTATCGCCGCAGCCACACTAAAATGCCTCCTAGTGTGATTAAGAGCTTCATGTACCAGCTGTGCCGTGGAGTTGCTTATTGCCACAGCCGTGGCGTGATGCACAGGGACTTAAAGCCTCATAATCTGCTGGTGGACAAGGAAAAGGGCGTGTTAAAAATAGCAGATCTTGGACTGGGTAGGGCTTTTACTGTTCCTGTCAAAAAGTACACTCACGAGATTGTGACCCTTTGGTACAGGGCTCCTGAAGTTCTCTTGGGGGCTACTCACTACTCATTGCCTGTTGACATCTGGTCTGTTGGCTGTATATTCGCTGAAATGTCCCGAATGCAAGCTCTCTTCACTGGGGATTCTGAAGTACAACAACTTATGAACATTTTCAGGTTCCTAGGAACTCCCAATGAAGAAGTGTGGCCAGGAGTGACTAAATTGAAGGACTGGCATATCTACCCCCAGTGGAATCCTCAAGATATAAGCTGTGCTGTTCCAGACTTGGAACCAAGCGGTTTAAATCTGTTGTCTGAAATGCTGGTTTATGAGCCATCCAAGCGAATCTCAGCTAAGAAGGCACTAGAACATCCTTATTTTGATGACCTGGATAAATCACAATTCTGA___GTCCCTTTAAGGATTTAAGCAATTCAGGATAGTTTGTAGGTATCACCATCATTATATTGATTGGTTAATTGATTTGTGCTTTTCTGGGGTATAAATGGCCTATTGTCTGAGAAATAATCTCTGCAAACTTGTTGGCCGGTAAATAAGTGTTTTGTTGTGTTTGCACAAGCGAACGGACAATGTTGGTCAGACCTCAAATATTGTACTCCCCACACTAGGGAGCATTTACGGTGAATATAAGTTTTTCATAGTGTGTGTAAAAAGTATTGATAGTTCTTTTGGGTGGCTGTACAATTCGAGTCCCATTGACTTATCTTATTTTATCTTCCGTGGGAAGTATGAGAAATATCCAATATACCATGTGAGAGTTTTATGGGTTGGAAACAAGTAATATCAAAAGGCAGTTTGGTTTGAAAGACGCTTCGGAAGATAGGTCAAGTGAAATTTGAGTCAACACTGCAATTCTCTTAAAACACTTCTAATAATGCACCCACCTTTTCCATTCGAGGCTGGTTTTCCCGAATTGGGTTTTTGGGGTTGTATTAATACTTGATGCAGGACATCACAGTTCATAAAGCTCAGTCACTCACTGCCTATTGGCTATGCTCTCACAATAAACCAA

Fln Alignment:

sp_v1.1_unigene16606___MDGYEKMDKVGEGTYGKVYMARDKKTGQLVALKKTRLENDGEGIPPTALREISLLQMLSQDIYIVRLLDVKHTENKLGKPLLYLVFEYMESDLKKYIDSYRRSHTKMPPSVIKSFMYQLCRGVAYCHSRGVMHRDLKPHNLLVDKEKGVLKIADLGLGRAFTVPVKKYTHEIVTLWYRAPEVLLGATHYSLPVDIWSVGCIFAEMSRMQALFTGDSEVQQLMNIFRFLGTPNEEVWPGVTKLKDWHIYPQWNPQDISCAVPDLEPSGLNLLSEMLVYEPSKRISAKKALEHPYFDDLDKSQF
D5AAZ1_______________MDSYEKLEKVGEGTYGKVYKAKDKKTGKLVALKKTRLENDGEGIPPTALREISLLQMLSQDMHIVRLLDVEHTENKNGKPLLYLVFEYMDSDLKKYIDGYRRSHTKVLPKIIKSFMYQVCQGVAYCHSRGVMHRDLKPHNLLVDKQRGVIKIADLGLGRAFTVPIKKYTHEIVTLWYRAPEVLLGATHYSTPVDIWSVGCIFAEMSRMHALFTGDSEVQQLMSIFKFLGTPNEEVWPGVTKLKDWHIYPQWRPQDLSRAVPDLEPSGVDLLTKMLVYEPSKRISAKKALQHPYFDDLDKSQF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
277		80		20	0.995493
311	83		16		0.994512
312			16	83	0.994512
375	21		78		1.0
551		9		90	0.999872
816	96	3			0.993591
818			96	3	0.993591
819	94	3		1	0.964041
826	96		3		0.993591
827	96		3		0.993591
828	96	3			0.993591
855	19		80		1.0
883		3	96		0.990463
884			3	96	0.990463
887		96	3		0.991164
888	96			3	0.991164
896	96			3	0.991164
897	96		3		0.991164
898		96		3	0.991164
901	96	3			0.991825
902			96	3	0.991825
1029			25	75	1.0
1104			27	72	1.0
1114	21	78			1.0
1231	84		15		0.999986
1265			55	44	1.0
1278	14		85		0.993533
1325		66		33	0.997452
1447			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain