SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16604

Length: 3833 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16604
CGTCGTGACCTTGGCTGTCACTCAGGTTTGAGTCAGACCTTGCCAATCAACATCAGCCGCTTGTTTTTAACAAAATCTTATTACCATTCATACTCCTAGTTAACCAACCGAAGAGGAAAGATCACAAAAAATCCCGCAGAAGCATAAGCTCAGGGCCAACAAAGAACAACATAGCGGGATCCGGAGATTTCATCACTCTGTAAACATATTTTCTTCATTGGGCACTCAGATCAGAACTTACCACGAAGGATTAGGGGACAAATTTGGTCAAAATATGCCCAATTTTGGCCAGTCTTTGTGGGGTTTTTAGTACGGATCCGCGGCACTGCAGGTTGCGGAGCCGGAAAAAAATTGTCCGTTTCCAGGTGAAATCGATAGAAGAACCAGGTAAATGAGTTCAGCTTAGCGCAAATTCTTTTGGGTAGTAATGTAAATTTTGATGCTCAGAGTAGGAAGCAGATAGACAGATAGAACACAGGCTATTATGGCGAATAGTTTTCAAGATTTGAATCCCGTGCCCTCTCCCCGCACTCCCACGCCTTCATCTGAGAGGCGTGCCGCCCCCCCTGCGTTTTCTTCCCCTCTTGCAAATAGATTCTCCCCTCAATTGACACCAACAGCAAAAAGAACGTTAACGGACAGTTTTCATCATGCGGGTATCAGTTCACCAACGCCCTTACCGCCTTCATCATTGCCATCATCATCATCCGCAGCAGCAGCATTACCTTCTTCATCAGTGTTACCGGTATCAACGTCAGATGGGAAAAATGCAGTAGGAAGCCCCTATCAGATCCTCAATGGATCTGCAGAGGCTAGTACTAGCGCCGCGTCTCTGCATGGATCACAGTCACCTGACATCACTAGTGTCCCCATGCTCTACAAGCAGAACAACAGCAGAACCAATAGCCCGGCGCAATTCAATACACCGCCTGGTCCCCCAGTTTTCGGCTCCCCCCTCAGACCCTCTGCTGCTCCATTCAGCCCCATGCCCACTGCACCGCAGCCCGGTGGAACTGCTCACTTCTCGGAAATCCCATTCACATCCCCGACCCGGCCTGGAGTTTTGTTGCCCACATCGTCGCTGCCAACAGTTTATTCAAATGGAAAGTCAGAGCCACAATTGAATATTGTTGAGAACCTGGACAAAGCAGGTTTGGTTGCAGCGTCACCGTACGTTCTTTTCTCTGCACATAAGATAATGAAGCAAAAAAAGTCAGGTGTCATTCCAACCATTGGATTTGGTGCGTTGGTTTCTCCCGGTCAGGAGATTGCACCAGGTCCCCAAACAGTACAACACAATCCACACCGTTGCCATAATTGTGGAGCATATGTTAATCTATATTGCAGCATTATCCCAAGCTCAGGAGAGTGGAAGTGTGTGATATGCAAGAAGCTAAATAGCAGTGAAAGTGAATACAGGGCAGCAAGCAGAGATGACCTTCGAAACTGGCCAGAGCTCTCATCAACTGTTGTGGATTATGTTGAAACTGACATGCGACGTCCTGGGTTTGTCCCTGTCTCTGACTCGAGAATGTCAGCACCAGTTATAATTGTTATTGATGAATGCCTGGATGAGCCTCATCTCCAGCATTTGCAGAGTTCTCTTCATGCCTTTGTTGATTCCCTTCCTCCAACTACAAGGATTGGAATTGTTACATATGGTCGGACAGTGTCTGTATATGATTTTTCGGAAACTGGATTAGCATCCGCAGACATGCTTCCAGGTAGTAAATCTCCATCACAGGATTCTTTGAAAACAATGATATATGGAACCGGTGTTTATCTTGCCCCTCTTCATGTATCTCTTAATGTTGCACACACTGTGTTCTCTGCCTTGAGACCATATAAAGGAGAACATCCAGAGGCAGCAAGAGACCGATGCGTTGGCACAGCTGTTGAGGTTGCCCTTGCACTTATTCAGGGGCCCTCAGCAGAGATGCCCCGGGGCATAGTAAAAAGGTCTGGAGGCAGTTGTCGAATTATGGTTTGTGCAGGGGGGCCTAACACCTTTGGGCCTGGAGCTGTTCCTTACTCATTAAGTCACCCAAACTATGCTTACATGGAAAAGAAGGCCATGAAATGGATGGACCATCTGGGCCATGAAGCTCGTCGTCATGACACTGTTGTGGATATCTTCTGTGCTGGGACATGTCCTGTGAGAATTCCAATTTTGCAGCCTCTTGCAAAAGCGTCAGGTGGTGTGCTAATTCTTCATGATGACTTTGGAGAGGCATTTGGAGTTAACTTGCAAAGGGCTGCAAAAAGAGCCGCCGGATCTCAGGGCATCTTTGAAATTCGTTGTTCTGATGGAATTTATGTGAGCCGAGTCATAGGACCAGGTGAAGAGGCTCACTTGGATGCTCACGAGACATTCAAAAATGATAATTCAATTTCCATTCAGATGGTTAGTGTGGAAGAAACTCAGAGCTTTGCTGTCTCCATGGAACAAAAGAGTGACATCAAGGAAAATCATGTCTTCTTTCAGTTTGCAGCTCATTATACAAATGTTAATCACGCAAATATTTCAAGGGTTATCACAATCATATTACCAACCACAGATAATCTATCAGCCTATCTTGAAAGTATCGAAGGTGAGGTAGCAGCTGTTCTTATTGCCAAAAGGGCTGTTTTACAAGCAAACAATCCTTCTGATGCAGCGAGTATGCGTCTTGCTATTGATGAAAGGATTAAAGATATTACTTCAAAGTTTGGAACACAGGTGCCTAAAGTAAAACTTCAACGCTTTCCAAAAGAGCTCTCTTTACTTCCTGAATATTTGTTCCATTTGAGGCGGGGTCCTCTTTTTGGAAGTATTATTGGTCATGAAGATGAAAGATCAGTTCTCAGAAACATTTTCTTACAAGCTTCATTTGATTTATCCCTCCGTATGTTGGCTCCACGTGTTTTAATGCACCGAGAAGGAGGCACTTTTGAGGAGTTGCCTGCATATGATCTTGCTATGCAGTCTGATGCAGCTGTTGTCCTTGATCATGGAACTGATGTATTTATATGGCTGGGTGCAGATCTTGCTGCTCAGGAAGGAAAAAGTGCAGCAGCTTTAGCAGCCTGCAGAACACTTGCAGAAGAGATAACAGAACAACGGTTTCCTGCTCCTCGCATTCTTTCATTCAAAGAGGGAAGCTCTCAAGCACGGTACATTTCATCAAGGTTGATTCCTGCGCATAAGGACCCTCCATATGAGCAGGAAGCAAGATTTCCTCAGCTGCGCACCTTAACACCTGAACAAAGGACAAAACTAAAAAGTAGCTTTCTACATTTAGATGATTTAAGTTTTTGCGAGTGGATGCGCACTATGAAATTAGTTCCTCCTGAACCGAGCTAATTTCCAGAAGCATAATGAAGGTGTTCTCTGTACCCATTCTCTGCACTTACTGTGCACCAGGAAAGTGCAACCACTTGAGTTCAAAATGGAGTTGAGCATGGGCTATTTCATCCTGTGCATTCAGTGCGGAAGATGAAATTCTTTGGGTTGAAAGATGTCCGAACAAGGTCCTTAGATAGCAAATGATGATGTGACCTGTTAATTTACATTTCCATTGTTTTGGTTCTTGGAACAAGATATGAGGTATGTATTGGATGCCTTACGGAGATTTTACAAATTTTTGTATAAGCACTGTATATTTTGGAGGCATCAGTTAATAAGTAACTCAGAGCTGGTTGCATGAAAATATTCACTTGGCAGCAATAATTTTCAAGAATTGAATGAAAGAAATCATTTTATTTGTGAGCAATATCTTACAAGTTTGAAAGCTTGCAATACCTCCTCCTATATAGGAAGGTTTCACATTTATCAGTTTATAAAAATTGCTTAA

Ace file of the UniGene sp_v1.1_unigene16604

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein-related	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	79%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	COPII vesicle coat	GO:0030127	Cellular Component	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, Sec23/Sec24-type	IPR006895	-	79%
Blast2go	Sec23/Sec24, trunk domain	IPR006896	-	79%
Blast2go	Sec23/Sec24, helical domain	IPR006900	-	79%
Blast2go	Sec23/Sec24 beta-sandwich	IPR012990	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC86

Fln msg: your sequence is longer than subject: 953 - 127

Fln protein: MANSFQDLNPVPSPRTPTPSSERRAAPPAFSSPLANRFSPQLTPTAKRTLTDSFHHAGISSPTPLPPSSLPSSSSAAAALPSSSVLPVSTSDGKNAVGSPYQILNGSAEASTSAASLHGSQSPDITSVPMLYKQNNSRTNSPAQFNTPPGPPVFGSPLRPSAAPFSPMPTAPQPGGTAHFSEIPFTSPTRPGVLLPTSSLPTVYSNGKSEPQLNIVENLDKAGLVAASPYVLFSAHKIMKQKKSGVIPTIGFGALVSPGQEIAPGPQTVQHNPHRCHNCGAYVNLYCSIIPSSGEWKCVICKKLNSSESEYRAASRDDLRNWPELSSTVVDYVETDMRRPGFVPVSDSRMSAPVIIVIDECLDEPHLQHLQSSLHAFVDSLPPTTRIGIVTYGRTVSVYDFSETGLASADMLPGSKSPSQDSLKTMIYGTGVYLAPLHVSLNVAHTVFSALRPYKGEHPEAARDRCVGTAVEVALALIQGPSAEMPRGIVKRSGGSCRIMVCAGGPNTFGPGAVPYSLSHPNYAYMEKKAMKWMDHLGHEARRHDTVVDIFCAGTCPVRIPILQPLAKASGGVLILHDDFGEAFGVNLQRAAKRAAGSQGIFEIRCSDGIYVSRVIGPGEEAHLDAHETFKNDNSISIQMVSVEETQSFAVSMEQKSDIKENHVFFQFAAHYTNVNHANISRVITIILPTTDNLSAYLESIEGEVAAVLIAKRAVLQANNPSDAASMRLAIDERIKDITSKFGTQVPKVKLQRFPKELSLLPEYLFHLRRGPLFGSIIGHEDERSVLRNIFLQASFDLSLRMLAPRVLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGADLAAQEGKSAAALAACRTLAEEITEQRFPAPRILSFKEGSSQARYISSRLIPAHKDPPYEQEARFPQLRTLTPEQRTKLKSSFLHLDDLSFCEWMRTMKLVPPEPS*

Protein Length: 954

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGAGTCAGACCTTGCCAATCAACATCAGCCGCTTGTTTTTAACAAAATCTTATTACCATTCATACTCCTAGTTAACCAACCGAAGAGGAAAGATCACAAAAAATCCCGCAGAAGCATAAGCTCAGGGCCAACAAAGAACAACATAGCGGGATCCGGAGATTTCATCACTCTGTAAACATATTTTCTTCATTGGGCACTCAGATCAGAACTTACCACGAAGGATTAGGGGACAAATTTGGTCAAAATATGCCCAATTTTGGCCAGTCTTTGTGGGGTTTTTAGTACGGATCCGCGGCACTGCAGGTTGCGGAGCCGGAAAAAAATTGTCCGTTTCCAGGTGAAATCGATAGAAGAACCAGGTAAATGAGTTCAGCTTAGCGCAAATTCTTTTGGGTAGTAATGTAAATTTTGATGCTCAGAGTAGGAAGCAGATAGACAGATAGAACACAGGCTATT_-_ATGGCGAATAGTTTTCAAGATTTGAATCCCGTGCCCTCTCCCCGCACTCCCACGCCTTCATCTGAGAGGCGTGCCGCCCCCCCTGCGTTTTCTTCCCCTCTTGCAAATAGATTCTCCCCTCAATTGACACCAACAGCAAAAAGAACGTTAACGGACAGTTTTCATCATGCGGGTATCAGTTCACCAACGCCCTTACCGCCTTCATCATTGCCATCATCATCATCCGCAGCAGCAGCATTACCTTCTTCATCAGTGTTACCGGTATCAACGTCAGATGGGAAAAATGCAGTAGGAAGCCCCTATCAGATCCTCAATGGATCTGCAGAGGCTAGTACTAGCGCCGCGTCTCTGCATGGATCACAGTCACCTGACATCACTAGTGTCCCCATGCTCTACAAGCAGAACAACAGCAGAACCAATAGCCCGGCGCAATTCAATACACCGCCTGGTCCCCCAGTTTTCGGCTCCCCCCTCAGACCCTCTGCTGCTCCATTCAGCCCCATGCCCACTGCACCGCAGCCCGGTGGAACTGCTCACTTCTCGGAAATCCCATTCACATCCCCGACCCGGCCTGGAGTTTTGTTGCCCACATCGTCGCTGCCAACAGTTTATTCAAATGGAAAGTCAGAGCCACAATTGAATATTGTTGAGAACCTGGACAAAGCAGGTTTGGTTGCAGCGTCACCGTACGTTCTTTTCTCTGCACATAAGATAATGAAGCAAAAAAAGTCAGGTGTCATTCCAACCATTGGATTTGGTGCGTTGGTTTCTCCCGGTCAGGAGATTGCACCAGGTCCCCAAACAGTACAACACAATCCACACCGTTGCCATAATTGTGGAGCATATGTTAATCTATATTGCAGCATTATCCCAAGCTCAGGAGAGTGGAAGTGTGTGATATGCAAGAAGCTAAATAGCAGTGAAAGTGAATACAGGGCAGCAAGCAGAGATGACCTTCGAAACTGGCCAGAGCTCTCATCAACTGTTGTGGATTATGTTGAAACTGACATGCGACGTCCTGGGTTTGTCCCTGTCTCTGACTCGAGAATGTCAGCACCAGTTATAATTGTTATTGATGAATGCCTGGATGAGCCTCATCTCCAGCATTTGCAGAGTTCTCTTCATGCCTTTGTTGATTCCCTTCCTCCAACTACAAGGATTGGAATTGTTACATATGGTCGGACAGTGTCTGTATATGATTTTTCGGAAACTGGATTAGCATCCGCAGACATGCTTCCAGGTAGTAAATCTCCATCACAGGATTCTTTGAAAACAATGATATATGGAACCGGTGTTTATCTTGCCCCTCTTCATGTATCTCTTAATGTTGCACACACTGTGTTCTCTGCCTTGAGACCATATAAAGGAGAACATCCAGAGGCAGCAAGAGACCGATGCGTTGGCACAGCTGTTGAGGTTGCCCTTGCACTTATTCAGGGGCCCTCAGCAGAGATGCCCCGGGGCATAGTAAAAAGGTCTGGAGGCAGTTGTCGAATTATGGTTTGTGCAGGGGGGCCTAACACCTTTGGGCCTGGAGCTGTTCCTTACTCATTAAGTCACCCAAACTATGCTTACATGGAAAAGAAGGCCATGAAATGGATGGACCATCTGGGCCATGAAGCTCGTCGTCATGACACTGTTGTGGATATCTTCTGTGCTGGGACATGTCCTGTGAGAATTCCAATTTTGCAGCCTCTTGCAAAAGCGTCAGGTGGTGTGCTAATTCTTCATGATGACTTTGGAGAGGCATTTGGAGTTAACTTGCAAAGGGCTGCAAAAAGAGCCGCCGGATCTCAGGGCATCTTTGAAATTCGTTGTTCTGATGGAATTTATGTGAGCCGAGTCATAGGACCAGGTGAAGAGGCTCACTTGGATGCTCACGAGACATTCAAAAATGATAATTCAATTTCCATTCAGATGGTTAGTGTGGAAGAAACTCAGAGCTTTGCTGTCTCCATGGAACAAAAGAGTGACATCAAGGAAAATCATGTCTTCTTTCAGTTTGCAGCTCATTATACAAATGTTAATCACGCAAATATTTCAAGGGTTATCACAATCATATTACCAACCACAGATAATCTATCAGCCTATCTTGAAAGTATCGAAGGTGAGGTAGCAGCTGTTCTTATTGCCAAAAGGGCTGTTTTACAAGCAAACAATCCTTCTGATGCAGCGAGTATGCGTCTTGCTATTGATGAAAGGATTAAAGATATTACTTCAAAGTTTGGAACACAGGTGCCTAAAGTAAAACTTCAACGCTTTCCAAAAGAGCTCTCTTTACTTCCTGAATATTTGTTCCATTTGAGGCGGGGTCCTCTTTTTGGAAGTATTATTGGTCATGAAGATGAAAGATCAGTTCTCAGAAACATTTTCTTACAAGCTTCATTTGATTTATCCCTCCGTATGTTGGCTCCACGTGTTTTAATGCACCGAGAAGGAGGCACTTTTGAGGAGTTGCCTGCATATGATCTTGCTATGCAGTCTGATGCAGCTGTTGTCCTTGATCATGGAACTGATGTATTTATATGGCTGGGTGCAGATCTTGCTGCTCAGGAAGGAAAAAGTGCAGCAGCTTTAGCAGCCTGCAGAACACTTGCAGAAGAGATAACAGAACAACGGTTTCCTGCTCCTCGCATTCTTTCATTCAAAGAGGGAAGCTCTCAAGCACGGTACATTTCATCAAGGTTGATTCCTGCGCATAAGGACCCTCCATATGAGCAGGAAGCAAGATTTCCTCAGCTGCGCACCTTAACACCTGAACAAAGGACAAAACTAAAAAGTAGCTTTCTACATTTAGATGATTTAAGTTTTTGCGAGTGGATGCGCACTATGAAATTAGTTCCTCCTGAACCGAGCTAA___TTTCCAGAAGCATAATGAAGGTGTTCTCTGTACCCATTCTCTGCACTTACTGTGCACCAGGAAAGTGCAACCACTTGAGTTCAAAATGGAGTTGAGCATGGGCTATTTCATCCTGTGCATTCAGTGCGGAAGATGAAATTCTTTGGGTTGAAAGATGTCCGAACAAGGTCCTTAGATAGCAAATGATGATGTGACCTGTTAATTTACATTTCCATTGTTTTGGTTCTTGGAACAAGATATGAGGTATGTATTGGATGCCTTACGGAGATTTTACAAATTTTTGTATAAGCACTGTATATTTTGGAGGCATCAGTTAATAAGTAACTCAGAGCTGGTTGCATGAAAATATTCACTTGGCAGCAATAATTTTCAAGAATTGAATGAAAGAAATCATTTTATTTGTGAGCAATATCTTACAAGTTTGAAAGCTTGCAATACCTCCTCCTATATAGGAAGGTTTCACATTTATCAGTTTATAAAAATTGCTTAA

Fln Alignment:

sp_v1.1_unigene16604___MQSDAAVVLDHGTDVFIWLGADLAAQEGKSXXXXXXCRTLAEEITEQRFPAPRILSFKEGSSQARYISSRLIPAHKDPPYEQEARFPQLRTLTPEQRTKLKSSFLHLDDLSFCEWMRTMKLVPPEPS
D5AC86_______________MQSDAAVVLDHGTDVFIWLGADLSAQEGKSAAALAACRTLAEEITEQRFPAPRILSFKEGSSQARYILSRLIPAHKDPPYEQEARFPQLRTLTPEQRTKLKSSFLHLDDLSFCEWMRSMKLVPPEPS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
648		12		87	0.992554
649			12	87	0.992554
651		87	12		0.992554
653		12		87	0.992554
655	87			12	0.992554
658		85	14		0.993533
659		14	85		0.993533
660			85	14	0.993533
685		87		12	0.992554
688	12	87			0.992554
793	88		11		0.923564
870		14	85		0.993533
986	25		25		0.995533
3034		12		87	0.992554
3122			25	75	1.0
3264		66		33	0.997452
3305		20		80	0.995493
3319		83		16	0.994512
3320			16	83	0.994512
3321	83		16		0.994512
3322			16	83	0.994512
3372		16		83	0.994512
3402	14		85		0.993533
3405		85	14		0.993533
3406	85		14		0.993533
3753		16		83	0.994512
3756	16		83		0.994512
3757	16	83			0.994512
3760	20			80	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
696	708	CAT CAT CAT CAT C	13
710	721	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain